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S28_scaffold_219_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_219_curated_1
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

2..1489
DNA (1488bp) protein (496aa)
Putative fumarate hydratase class I id=1298564 bin=GWE1_Spirochaete_60_18 species=Mobilicoccus pelagius genus=Mobilicoccus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes rbh
fumarate hydrolyase
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_2
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(1456..2079)
DNA (624bp) protein (208aa)
MutT/nudix family protein id=3904736 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
MutT/NUDIX family protein
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_219_curated_3
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

2148..2519
DNA (372bp) protein (124aa)
Uncharacterized protein id=3904734 bin=GWB1_Spirochaetes_59_5 species=unknown genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_4
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

2562..3770
DNA (1209bp) protein (403aa)
glycosyltransferase family protein (EC:2.4.-.-) rbh
Glycosyltransferase, group 2 family id=3458856 bin=GWA1_Treponema_62_8 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA1_Treponema_62_8 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_5
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

3799..4473
DNA (675bp) protein (225aa)
Putative transcriptional regulator, Crp/Fnr family id=3105770 bin=GWB1_Spirochaetales_60_80 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
putative Crp/Fnr family transcriptional regulator
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_6
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

4651..6738
DNA (2088bp) protein (696aa)
Methyl-accepting chemotaxis protein id=1270178 bin=GWE1_Spirochaetes_32_154 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaetes_32_154 organism_group=Spirochaetes rbh
methyl-accepting chemotaxis protein rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_7
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(6843..7379)
DNA (537bp) protein (179aa)
ketoisovalerate oxidoreductase subunit VorA (EC:1.2.7.7)
Ketoisovalerate oxidoreductase subunit VorA (VOR) (2-oxoisovalerate oxidoreductase alpha chain) (2-oxoisovalerateferredoxin reductase subunit alpha) id=3904728 bin=GWB1_Spirochaetes_59_5 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_8
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(7376..8182)
DNA (807bp) protein (269aa)
2-oxoglutarate synthase (EC:1.2.7.3) rbh
2-oxoglutarate synthase id=3082101 bin=GWB1_Spirochaetales_60_80 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_9
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(8196..9263)
DNA (1068bp) protein (356aa)
3-methyl-2-oxobutanoate dehydrogenase (ferredoxin) (EC:1.2.7.7) rbh
3-methyl-2-oxobutanoate dehydrogenase (Ferredoxin) id=3082102 bin=GWB1_Spirochaetales_60_80 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_10
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(9276..9491)
DNA (216bp) protein (72aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein id=3082103 bin=GWB1_Spirochaetales_60_80 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_11
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

comp(9502..10410)
DNA (909bp) protein (303aa)
phosphate butyryltransferase (EC:2.3.1.19) rbh
Phosphate butyryltransferase id=2494760 bin=GWF1_Spirochaetes_60_12 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes rbh
Tax=GWB1_Spirochaetes_60_80_curated
S28_scaffold_219_curated_12
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(10411..11481)
DNA (1071bp) protein (357aa)
butyrate kinase (EC:2.7.2.7) rbh
Probable butyrate kinase id=3285850 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_13
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

11752..12777
DNA (1026bp) protein (342aa)
tdh; L-threonine 3-dehydrogenase (EC:1.1.1.103) rbh
L-threonine 3-dehydrogenase id=3016530 bin=GWF1_Spirochaetes_60_12 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes rbh
Tax=GWB1_Spirochaetes_60_80_curated
S28_scaffold_219_curated_14
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

12953..14689
DNA (1737bp) protein (579aa)
small ribosomal subunit Rsm22 family protein id=3285839 bin=GWB1_Spirochaetes_59_5 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
ribosomal small subunit Rsm22
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_trna_1
unknown

Not on your lists

14738..14811
DNA (74bp)
transferRNA Asp
S28_scaffold_219_curated_trna_2
unknown

Not on your lists

14843..14914
DNA (72bp)
transferRNA Pro
S28_scaffold_219_curated_15
unknown

Not on your lists

comp(15307..15423)
DNA (117bp) protein (39aa)

This feature has no annotations

S28_scaffold_219_curated_16
unknown

Not on your lists

comp(15455..16135)
DNA (681bp) protein (227aa)

This feature has no annotations

S28_scaffold_219_curated_17
RIFOXYB2_FULL_WOR_2_38_16_curated, WOR-2, Bacteria

Not on your lists

comp(16177..16368)
DNA (192bp) protein (64aa)
Putative uncharacterized protein id=4223236 bin=GWF2_OP3_43_52 species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
Tax=RIFOXYB2_FULL_WOR_2_38_16_curated
S28_scaffold_219_curated_18
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(16545..17009)
DNA (465bp) protein (155aa)
Rhodanese domain protein id=3763251 bin=GWF2_Bacteroidetes_43_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes
rhodanese domain-containing protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_19
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

17070..17660
DNA (591bp) protein (197aa)
Thioredoxin id=3738549 bin=GWB1_Spirochaetes_59_5 species=unknown genus=Dehalobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Thioredoxin
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_219_curated_20
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

17660..18364
DNA (705bp) protein (235aa)
cytochrome c biogenesis protein id=3738552 bin=GWB1_Spirochaetes_59_5 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
putative cytochrome c biogenesis protein
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_219_curated_21
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

comp(18468..19652)
DNA (1185bp) protein (395aa)
Putative uncharacterized protein id=1351855 bin=GWE1_Spirochaete_60_18 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes rbh
hypothetical protein rbh
Tax=GWB1_Spirochaetes_60_80_curated
S28_scaffold_219_curated_22
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(19649..20020)
DNA (372bp) protein (124aa)
DGC domain protein id=3738562 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
DGC domain-containing protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_219_curated_23
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(20022..20261)
DNA (240bp) protein (80aa)
Redox-active disulfide protein 2 id=3738563 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
redox-active disulfide protein 2
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_219_curated_24
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

20505..20708
DNA (204bp) protein (68aa)
Regulatory protein ArsR id=3083046 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
regulatory protein ArsR
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_219_curated_25
Candidatus Magnetobacterium bavaricum, Candidatus Magnetobacterium, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

20961..22643
DNA (1683bp) protein (561aa)
Methyl-accepting chemotaxis sensory transducer id=2991831 bin=GWF1_Xanthomonadales_69_6 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:KJU84019.1}; TaxID=29290 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetobacterium.;" source="Candidatus Magnetobacterium bavaricum.;"
methyl-accepting chemotaxis sensory transducer
S28_scaffold_219_curated_26
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

22646..23137
DNA (492bp) protein (164aa)
CheW protein id=2991834 bin=GWF1_Xanthomonadales_69_6 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
CheW protein
Tax=GWB1_Spirochaetes_60_80_curated
S28_scaffold_219_curated_27
BJP_08E140C01_Spirochaeta_53_29, Spirochaeta, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(23178..24452)
DNA (1275bp) protein (425aa)
Sodium/hydrogen exchanger id=4352422 bin=GWC2_Spirochaete_52_13 species=Sphaerochaeta globosa genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Spirochaete_52_13 organism_group=Spirochaetes rbh
sodium/hydrogen exchanger rbh
Tax=BJP_08E140C01_Spirochaeta_53_29
S28_scaffold_219_curated_28
GWF2_Lentisphaerae_52_8_curated, Lentisphaerae, Bacteria

Not on your lists

comp(24637..25437)
DNA (801bp) protein (267aa)
Beta-lactamase domain protein id=3133179 bin=GWF2_Lentisphaerae_52_8 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
beta-lactamase
Tax=GWF2_Lentisphaerae_52_8_curated
Displaying 30 items

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