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S28_scaffold_500_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S28_scaffold_500_curated_1
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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2..1387
DNA (1386bp) protein (462aa)
prolyl-tRNA synthetase (EC:6.1.1.15) rbh
Proline--tRNA ligase id=3931032 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_500_curated_2
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

1339..2559
DNA (1221bp) protein (407aa)
id=3931033 bin=GWB1_Spirochaetes_59_5 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_500_curated_3
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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2570..3247
DNA (678bp) protein (226aa)
id=3931034 bin=GWB1_Spirochaetes_59_5 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_500_curated_4
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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comp(3286..3942)
DNA (657bp) protein (219aa)
Channel protein, hemolysin III family id=3931038 bin=GWB1_Spirochaetes_59_5 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
hemolysin III-like protein
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_500_curated_5
unknown

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comp(4132..4248)
DNA (117bp) protein (39aa)

This feature has no annotations

S28_scaffold_500_curated_6
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

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comp(4472..5878)
DNA (1407bp) protein (469aa)
Sigma-54-dependent transcriptional response regulator id=1317486 bin=GWE1_Spirochaete_60_18 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_Spirochaete_60_18 organism_group=Spirochaetes rbh
chemotaxis protein CheY
Tax=GWB1_Spirochaetes_60_80_curated
S28_scaffold_500_curated_7
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(5868..8072)
DNA (2205bp) protein (735aa)
PAS/PAC sensor signal transduction histidine kinase id=3826370 bin=GWB1_Spirochaetes_59_5 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
histidine kinase
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_500_curated_8
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(8069..8806)
DNA (738bp) protein (246aa)
PHP domain protein id=3826371 bin=GWB1_Spirochaetes_59_5 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
PHP domain-containing protein
Tax=GWB1_Spirochaetes_59_5_curated
S28_scaffold_500_curated_9
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(8838..9191)
DNA (354bp) protein (118aa)
Putative uncharacterized protein id=3826372 bin=GWB1_Spirochaetes_59_5 species=Sphaerochaeta globosa genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_500_curated_10
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(9230..10231)
DNA (1002bp) protein (334aa)
Putative signal transduction protein with CBS domains id=3826373 bin=GWB1_Spirochaetes_59_5 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes rbh
signal transduction protein with CBS domains rbh
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
S28_scaffold_500_curated_11
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

comp(10245..11654)
DNA (1410bp) protein (470aa)
Putative uncharacterized protein id=3146039 bin=GWF2_Firmicute_51_9 species=marine gamma proteobacterium HTCC2148 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
sugar (glycoside-Pentoside-hexuronide) transporter
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
Displaying 11 items

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