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S4_scaffold_131_curated

Search features with annotation key words

Displaying items 1-30 of 192 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S4_scaffold_131_curated_1
unknown

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3..398
DNA (396bp) protein (132aa)

This feature has no annotations

S4_scaffold_131_curated_2
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(552..1358)
DNA (807bp) protein (269aa)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LVN4_RUEPO rbh
enoyl-CoA hydratase/isomerase family protein rbh
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:AAV93974.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
S4_scaffold_131_curated_3
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1355..3232)
DNA (1878bp) protein (626aa)
ABC transporter, ATP-binding component n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q984M8_RHILO rbh
Glycosyl transferase family 1 {ECO:0000313|EMBL:EZQ15138.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
ABC transporter ATP-binding protein rbh
S4_scaffold_131_curated_4

Not on your lists

3480..3746
DNA (267bp) protein (89aa)
Ribosomal protein S21 n=1 Tax=uncultured organism RepID=T1W9Y9_9ZZZZ
Ribosomal protein S21 {ECO:0000313|EMBL:AGU11339.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
30S ribosomal protein S21
S4_scaffold_131_curated_5
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3776..4270)
DNA (495bp) protein (165aa)
DinB family protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQF9_9RHIZ
DinB family protein {ECO:0000313|EMBL:EHK57031.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
DinB family protein
S4_scaffold_131_curated_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4351..5046
DNA (696bp) protein (232aa)
Glutathione S-transferase domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQG0_9RHIZ rbh
Glutathione S-transferase domain-containing protein {ECO:0000313|EMBL:EHK57032.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
glutathione S-transferase domain-containing protein rbh
S4_scaffold_131_curated_7
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5129..5551
DNA (423bp) protein (141aa)
nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
Nucleoside diphosphate kinase n=8 Tax=Rhizobium meliloti RepID=NDK_RHIME
S4_scaffold_131_curated_8
unknown

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comp(5518..5607)
DNA (90bp) protein (30aa)

This feature has no annotations

S4_scaffold_131_curated_9
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5604..7847)
DNA (2244bp) protein (748aa)
Diguanylate cyclase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MDR4_9RHIZ rbh
Diguanylate cyclase {ECO:0000313|EMBL:EKF20316.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
diguanylate cyclase rbh
S4_scaffold_131_curated_10
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8005..9165)
DNA (1161bp) protein (387aa)
Extracellular solute-binding protein, family 3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9F0_PELHB rbh
ABC transporter substrate-binding protein rbh
Extracellular solute-binding protein, family 3 {ECO:0000313|EMBL:AEQ53484.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
S4_scaffold_131_curated_11
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9366..9827)
DNA (462bp) protein (154aa)
Molybdopterin converting factor, subunit 2 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQG2_9RHIZ
Molybdopterin converting factor, subunit 2 {ECO:0000313|EMBL:EHK57034.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
molybdopterin biosynthesis MoaE protein
S4_scaffold_131_curated_12
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9830..10105)
DNA (276bp) protein (92aa)
molybdenum cofactor biosynthesis protein MoaD n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C5CD7
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
molybdopterin converting factor subunit 1
S4_scaffold_131_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10089..10679)
DNA (591bp) protein (197aa)
Phosphatidylglycerophosphate synthase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UAX2_RHIRD rbh
Phosphatidylglycerophosphate synthase {ECO:0000313|EMBL:EGP57468.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase rbh
S4_scaffold_131_curated_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10821..12857)
DNA (2037bp) protein (679aa)
UvrABC system protein C n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HQG6_9RHIZ rbh
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
excinuclease ABC subunit C rbh
S4_scaffold_131_curated_15
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12854..13618)
DNA (765bp) protein (255aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKK5_MESCW rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADV13825.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
S4_scaffold_131_curated_16
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14039..14701
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000382586D
Membrane protein {ECO:0000313|EMBL:EXL08760.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
porin
S4_scaffold_131_curated_17
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14781..15377)
DNA (597bp) protein (199aa)
glutathione S-transferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003122F03 rbh
Glutathione S-transferase domain-containing protein {ECO:0000313|EMBL:EHK57027.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
glutathione S-transferase domain-containing protein
S4_scaffold_131_curated_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15457..16131)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000373059B rbh
Ribonuclease T2 {ECO:0000313|EMBL:EHK57021.1}; Flags: Fragment;; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ribonuclease T2
S4_scaffold_131_curated_19
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16182..16607)
DNA (426bp) protein (142aa)
Uncharacterized protein n=2 Tax=Mesorhizobium RepID=V7GGW3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESZ06085.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
hypothetical protein
S4_scaffold_131_curated_20
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16666..17532)
DNA (867bp) protein (289aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
lactate dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI000368A6E3 rbh
hypothetical protein rbh
S4_scaffold_131_curated_21
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17598..19727
DNA (2130bp) protein (710aa)
Nitrate reductase (EC:1.7.99.4) rbh
UPI0003CE670B related cluster n=1 Tax=unknown RepID=UPI0003CE670B rbh
Dehydrogenase {ECO:0000313|EMBL:ESY63301.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
S4_scaffold_131_curated_22
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19885..20586)
DNA (702bp) protein (234aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003725265 rbh
phosphoribosylglycinamide formyltransferase
S4_scaffold_131_curated_23
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20586..21650)
DNA (1065bp) protein (355aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1) rbh
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKG8_MESCW rbh
S4_scaffold_131_curated_24
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21827..22381
DNA (555bp) protein (185aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MDP8_9RHIZ
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:EKF20301.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
S4_scaffold_131_curated_25
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22413..23549
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F2R5_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV06106.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein rbh
S4_scaffold_131_curated_26
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23560..24261
DNA (702bp) protein (234aa)
UPI0003CFF74B related cluster n=1 Tax=unknown RepID=UPI0003CFF74B
Uncharacterized protein {ECO:0000313|EMBL:ESZ17843.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
S4_scaffold_131_curated_27
unknown

Not on your lists

comp(24576..25148)
DNA (573bp) protein (191aa)

This feature has no annotations

S4_scaffold_131_curated_trna_4
unknown

Not on your lists

comp(25221..25294)
DNA (74bp)
transferRNA Pro
S4_scaffold_131_curated_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25402..25707
DNA (306bp) protein (102aa)
ETC complex I subunit n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031C5DA9
ETC complex I subunit conserved region {ECO:0000313|EMBL:EHK55502.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ETC complex I subunit conserved region
S4_scaffold_131_curated_trna_1
unknown

Not on your lists

25724..25797
DNA (74bp)
transferRNA Arg
Displaying items 1-30 of 192 in total

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