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S4_scaffold_184_curated

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Displaying items 1-30 of 111 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S4_scaffold_184_curated_1
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1154
DNA (1152bp) protein (384aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=11 Tax=Rhizobiaceae RepID=EFTU_RHIME rbh
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; Flags: Fragment;; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
S4_scaffold_184_curated_2
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1220..1528
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=6 Tax=Rhizobiales RepID=G6YI85_9RHIZ
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
30S ribosomal protein S10
S4_scaffold_184_curated_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1631..2332
DNA (702bp) protein (234aa)
50S ribosomal protein L3 n=1 Tax=Hoeflea sp. 108 RepID=UPI000381D988 rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
rplC; 50S ribosomal protein L3 rbh
S4_scaffold_184_curated_4
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2332..2952
DNA (621bp) protein (207aa)
PREDICTED: 39S ribosomal protein L4, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C16556 rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
50S ribosomal protein L4/L1e rbh
S4_scaffold_184_curated_5
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2949..3242
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FB46_9RHIZ
rplW; 50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
S4_scaffold_184_curated_6
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3262..4095
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MCB3_9RHIZ rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
rplB; 50S ribosomal protein L2 rbh
S4_scaffold_184_curated_7
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4111..4389
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C2BBB
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
ribosomal protein S19, bacterial/organelle
S4_scaffold_184_curated_8
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4392..4781
DNA (390bp) protein (130aa)
50S ribosomal protein L22 n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BUN4_9RHIZ
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
rplV; 50S ribosomal protein L22
S4_scaffold_184_curated_9
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4781..5491
DNA (711bp) protein (237aa)
30S ribosomal protein S3 n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TMD0_MESCW rbh
30S ribosomal protein S3 rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
S4_scaffold_184_curated_10
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5526..5939
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TMD1_MESCW
50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
S4_scaffold_184_curated_11
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5954..6154
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MCA1_9RHIZ
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
50S ribosomal protein L29
S4_scaffold_184_curated_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6165..6407
DNA (243bp) protein (81aa)
30S ribosomal protein S17 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVB4_9RHIZ
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
30S ribosomal protein S17
S4_scaffold_184_curated_13
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6473..6841
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=15 Tax=Mesorhizobium RepID=RL14_RHILO
50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
S4_scaffold_184_curated_14
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6853..7164
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVB6_9RHIZ
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
rplX; 50S ribosomal protein L24
S4_scaffold_184_curated_15
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7157..7711
DNA (555bp) protein (185aa)
50S ribosomal protein L5 n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=RL5_RHILO rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
rplE; 50S ribosomal protein L5 rbh
S4_scaffold_184_curated_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7739..8044
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030785EB
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Ribosomal protein S14
S4_scaffold_184_curated_17
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8059..8457
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVB9_9RHIZ
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
30S ribosomal protein S8
S4_scaffold_184_curated_18
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8495..9028
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D5A98 rbh
rplF; 50S ribosomal protein L6 rbh
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
S4_scaffold_184_curated_19
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9122..9481
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FAQ0_9RHIZ
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
50S ribosomal protein L18
S4_scaffold_184_curated_20
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9595..10161
DNA (567bp) protein (189aa)
30S ribosomal protein S5 n=1 Tax=Hoeflea sp. 108 RepID=UPI00035EFACF rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
30S ribosomal protein S5 rbh
S4_scaffold_184_curated_21
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10173..10370
DNA (198bp) protein (66aa)
50S ribosomal protein L30 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVC3_9RHIZ
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
50S ribosomal protein L30
S4_scaffold_184_curated_22
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10393..10863
DNA (471bp) protein (157aa)
50S ribosomal protein L15 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E978F8
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
50S ribosomal protein L15
S4_scaffold_184_curated_23
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10991..12325
DNA (1335bp) protein (445aa)
UPI0003CFC126 related cluster n=1 Tax=unknown RepID=UPI0003CFC126 rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
secY; preprotein translocase subunit SecY rbh
S4_scaffold_184_curated_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12327..12914
DNA (588bp) protein (196aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
adenylate kinase (EC:2.7.4.3) rbh
UPI0003CED726 related cluster n=1 Tax=unknown RepID=UPI0003CED726 rbh
S4_scaffold_184_curated_25
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13097..13465
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000301C497
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
30S ribosomal protein S13
S4_scaffold_184_curated_26
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13616..14005
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=13 Tax=Mesorhizobium RepID=RS11_RHILO
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
S4_scaffold_184_curated_27
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14106..15116
DNA (1011bp) protein (337aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
DNA-directed RNA polymerase subunit alpha n=4 Tax=Mesorhizobium RepID=V7G205_9RHIZ rbh
DNA-directed RNA polymerase subunit alpha rbh
S4_scaffold_184_curated_28
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15229..15657
DNA (429bp) protein (143aa)
50S ribosomal protein L17 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N2C5_9RHIZ
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
50S ribosomal protein L17
S4_scaffold_184_curated_29
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15876..17129)
DNA (1254bp) protein (418aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1) rbh
Tyrosine--tRNA ligase n=1 Tax=Nitratireductor indicus C115 RepID=K2P199_9RHIZ rbh
S4_scaffold_184_curated_30
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17226..18377
DNA (1152bp) protein (384aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
anmK; anhydro-N-acetylmuramic acid kinase (EC:2.7.1.170)
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HS68_9RHIZ rbh
Displaying items 1-30 of 111 in total

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