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S4_scaffold_1161_curated

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S4_scaffold_1161_curated_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..558
DNA (558bp) protein (186aa)
Putative NADH dehydrogenase/NAD(P)H nitroreductase Plav_3612 {ECO:0000255|HAMAP-Rule:MF_01204}; EC=1.-.-.- {ECO:0000255|HAMAP-Rule:MF_01204};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Putative NADH dehydrogenase/NAD(P)H nitroreductase Plav_3612 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=Y3612_PARL1 rbh
hypothetical protein rbh
S4_scaffold_1161_curated_2
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(615..977)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003688A57
Possible lipase/esterase {ECO:0000313|EMBL:EAS50521.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
alpha/beta hydrolase fold-3 domain protein
S4_scaffold_1161_curated_3
Thalassolituus oleivorans, Thalassolituus, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(989..1423)
DNA (435bp) protein (145aa)
Esterase/lipase/thioesterase family protein n=1 Tax=Thalassolituus oleivorans MIL-1 RepID=M5DPZ2_9GAMM
esterase/lipase/thioesterase family protein
Esterase/lipase/thioesterase family protein {ECO:0000313|EMBL:CCU71538.1}; TaxID=1298593 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Thalassolituus.;" source="Thalassolituus oleivorans MIL-1.;"
S4_scaffold_1161_curated_4
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1427..2959)
DNA (1533bp) protein (511aa)
Drug resistance transporter EmrB/QacA subfamily n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12B01_POLSJ rbh
Major facilitator transporter {ECO:0000313|EMBL:KJK24563.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
EmrB/QacA family drug resistance transporter rbh
S4_scaffold_1161_curated_5
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3709..3921)
DNA (213bp) protein (71aa)
Cold-shock DNA-binding protein family protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MZ50_9RHIZ
Cold-shock protein {ECO:0000313|EMBL:EXL04388.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
cold-shock DNA-binding domain-containing protein
S4_scaffold_1161_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4384..5001
DNA (618bp) protein (206aa)
Substrate-specific component BioY of biotin ECF transporter n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GRY7_9PROT
BioY protein {ECO:0000313|EMBL:KFC66847.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
biotin synthase
S4_scaffold_1161_curated_7
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5043..5939)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TWY3_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EDP62919.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein rbh
S4_scaffold_1161_curated_8
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6310..9468)
DNA (3159bp) protein (1053aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
ileS; isoleucyl-tRNA ligase (EC:6.1.1.5) rbh
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003765D6B rbh
S4_scaffold_1161_curated_9
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9705..10235
DNA (531bp) protein (177aa)
Putative MarR family transcriptional regulator n=1 Tax=Rhodovulum sp. PH10 RepID=J6J339_9RHOB
MarR family transcriptional regulator {ECO:0000313|EMBL:EWY41765.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
MarR family transcriptional regulator
S4_scaffold_1161_curated_10
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10232..11344
DNA (1113bp) protein (371aa)
Secretion protein HlyD n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P5B9_AZOS1 rbh
Membrane protein {ECO:0000313|EMBL:KJB92524.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
secretion protein HlyD rbh
S4_scaffold_1161_curated_11
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11386..12960
DNA (1575bp) protein (525aa)
DSBA oxidoreductase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D93DC rbh
emrB; multidrug resistance protein B rbh
Multidrug resistance protein B {ECO:0000313|EMBL:BAI75849.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
S4_scaffold_1161_curated_12
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13152..13763
DNA (612bp) protein (204aa)
Glutathione S-transferase domain protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M7Q5_METRJ
Putative glutathione S-transferase {ECO:0000313|EMBL:GAN46550.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
glutathione S-transferase domain-containing protein
S4_scaffold_1161_curated_13
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13779..15092)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCY2_HYPSM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCB67703.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
S4_scaffold_1161_curated_14
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15107..15898)
DNA (792bp) protein (264aa)
iron ABC transporter ATP-binding protein n=1 Tax=Methyloferula stellata RepID=UPI00036B1AF3 rbh
methionine ABC transporter ATP-binding protein
Methionine ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAQ18191.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
S4_scaffold_1161_curated_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15903..17015)
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036194AA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABJ05686.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
S4_scaffold_1161_curated_16
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17189..19633)
DNA (2445bp) protein (815aa)
Putative cellobiose phosphorylase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N1E7_ANATU rbh
glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:AJY45664.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
S4_scaffold_1161_curated_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19816..20775)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NS27_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS31234.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
glycerate dehydrogenase rbh
S4_scaffold_1161_curated_18
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20831..21715)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003642DEE rbh
hypothetical protein
Integral membrane protein DUF6 {ECO:0000313|EMBL:ADZ69233.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
S4_scaffold_1161_curated_19
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21788..22543)
DNA (756bp) protein (252aa)
3-oxoacyl-acyl carrier protein reductase {ECO:0000313|EMBL:CCE06666.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CCE06666.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
3-oxoacyl-acyl carrier protein reductase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJM8_9BRAD
short-chain dehydrogenase/reductase SDR
S4_scaffold_1161_curated_20
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22811..23425
DNA (615bp) protein (205aa)
Monosaccharide ABC transporter membrane protein, CUT2 family n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13KN0_BURXL
branched-chain amino acid transport system / permease component family protein
Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:ABE35359.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
S4_scaffold_1161_curated_21
unknown

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23454..23615
DNA (162bp) protein (54aa)

This feature has no annotations

Displaying 21 items

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