ggKbase home page

S5_scaffold_37_curated

Search features with annotation key words

Displaying items 1-30 of 190 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S5_scaffold_37_curated_1
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..610
DNA (609bp) protein (203aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
Lon protease n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XH01_DESMR
lon; ATP-dependent protease La
S5_scaffold_37_curated_2
Trabulsiella guamensis, Trabulsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1055..1573
DNA (519bp) protein (173aa)
Thiosulfate reductase electron transport protein PhsB n=1 Tax=Salmonella enterica subsp. enterica serovar Eastbourne str. CFSAN001084 RepID=V2JYS2_SALET
Thiosulfate reductase electron transport protein {ECO:0000313|EMBL:KFC00383.1}; TaxID=1005994 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Trabulsiella.;" source="Trabulsiella guamensis ATCC 49490.;"
Thiosulfate reductase electron transport protein phsB
S5_scaffold_37_curated_3
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1685..2266)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FKS0_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN95143.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
S5_scaffold_37_curated_4
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2263..2751)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QE28_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EHJ46684.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
hypothetical protein
S5_scaffold_37_curated_5
Desulfovibrio piezophilus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2857..4860
DNA (2004bp) protein (668aa)
UvrABC system protein B n=1 Tax=Desulfovibrio piezophilus (strain DSM 21447 / JCM 15486 / C1TLV30) RepID=M1WNH1_DESPC rbh
uvrB; UvrABC system protein B rbh
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1322246 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio piezophilus (strain DSM 21447 / JCM 15486 / C1TLV30).;"
S5_scaffold_37_curated_6
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4853..5917
DNA (1065bp) protein (355aa)
K+ transport system, NAD-binding component n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GHA9_9DELT rbh
K+ transport system, NAD-binding component {ECO:0000313|EMBL:EKO40504.1}; Flags: Precursor;; TaxID=1206767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus str. Maddingley MBC34.;"
potassium channel protein rbh
S5_scaffold_37_curated_7
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5914..6606
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q0X0_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KHK04354.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
hypothetical protein
S5_scaffold_37_curated_8
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6603..8675
DNA (2073bp) protein (691aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
DNA ligase n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JVZ8_DESFR rbh
ligA; NAD-dependent DNA ligase rbh
S5_scaffold_37_curated_9
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8683..9468
DNA (786bp) protein (262aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q1I8_9DELT rbh
Dihydrodipicolinate reductase rbh
S5_scaffold_37_curated_10
RBG_16_RIF03_38_10_curated, RIF03, Bacteria

Not on your lists

9465..11150
DNA (1686bp) protein (562aa)
NH(3)-dependent NAD(+) synthetase (EC:6.3.1.5) rbh
NH(3)-dependent NAD(+) synthetase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01PL6_SOLUE rbh
Tax=RBG_16_RIF03_38_10_curated
S5_scaffold_37_curated_11
unknown

Not on your lists

comp(11162..11503)
DNA (342bp) protein (114aa)

This feature has no annotations

S5_scaffold_37_curated_12
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11823..12953)
DNA (1131bp) protein (377aa)
Phosphonate metabolism protein PhnM n=1 Tax=Desulfovibrio sp. X2 RepID=S7VH61_9DELT rbh
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:KKB11587.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
phosphonate metabolism protein PhnM rbh
S5_scaffold_37_curated_13
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13053..13901
DNA (849bp) protein (283aa)
Phophonate C-P lyase system transcriptional regulator PhnF, GntR family n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LNP5_DESBD
GntR family transcriptional regulator
Phophonate C-P lyase system transcriptional regulator PhnF, GntR family {ECO:0000313|EMBL:ACU88930.1}; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
S5_scaffold_37_curated_14
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14043..16211
DNA (2169bp) protein (723aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7UJ46_9DELT
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EPR32303.1}; TaxID=1121439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alkalitolerans DSM 16529.;"
methyl-accepting chemotaxis sensory transducer
S5_scaffold_37_curated_15
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16241..17251
DNA (1011bp) protein (337aa)
Putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2PZR8_9DELT rbh
Putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein {ECO:0000313|EMBL:EIG53024.1}; Flags: Precursor;; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein rbh
S5_scaffold_37_curated_16
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17319..18422
DNA (1104bp) protein (368aa)
ABC-type spermidine/putrescine transport system, ATPase component n=1 Tax=Desulfovibrio sp. U5L RepID=I2PZR7_9DELT rbh
Sulfate and thiosulfate import ATP-binding protein CysA {ECO:0000313|EMBL:KHK00630.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
putative ABC-type spermidine/putrescine transport system, ATPase component rbh
S5_scaffold_37_curated_17
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18433..20229
DNA (1797bp) protein (599aa)
Putative 2-aminoethylphosphonate ABC transporter, permease protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2PZR6_9DELT rbh
Putative 2-aminoethylphosphonate ABC transporter, permease protein {ECO:0000313|EMBL:EIG53022.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
putative 2-aminoethylphosphonate ABC transporter, permease protein rbh
S5_scaffold_37_curated_18
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20268..21107
DNA (840bp) protein (280aa)
Phosphonoacetaldehyde hydrolase {ECO:0000256|HAMAP-Rule:MF_01375}; Short=Phosphonatase {ECO:0000256|HAMAP-Rule:MF_01375};; EC=3.11.1.1 {ECO:0000256|HAMAP-Rule:MF_01375};; Phosphonoacetaldehyde phosphonohydrolase {ECO:0000256|HAMAP-Rule:MF_01375}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
Phosphonoacetaldehyde hydrolase n=1 Tax=Desulfovibrio sp. U5L RepID=I2PZR5_9DELT rbh
phosphonoacetaldehyde hydrolase rbh
S5_scaffold_37_curated_19
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21117..22508
DNA (1392bp) protein (464aa)
4-aminobutyrate aminotransferase family protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2PZR4_9DELT rbh
4-aminobutyrate aminotransferase family protein {ECO:0000313|EMBL:EIG53020.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
putative 4-aminobutyrate aminotransferase family protein rbh
S5_scaffold_37_curated_20
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22527..23657
DNA (1131bp) protein (377aa)
2-aminoethylphosphonate--pyruvate transaminase {ECO:0000256|HAMAP-Rule:MF_01376, ECO:0000256|SAAS:SAAS00009569}; EC=2.6.1.37 {ECO:0000256|HAMAP-Rule:MF_01376, ECO:0000256|SAAS:SAAS00009569};; 2-aminoethylphosphonate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01376}; AEP transaminase {ECO:0000256|HAMAP-Rule:MF_01376}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
2-aminoethylphosphonate--pyruvate transaminase n=1 Tax=Desulfovibrio sp. U5L RepID=I2PZR3_9DELT rbh
2-aminoethylphosphonate--pyruvate transaminase rbh
S5_scaffold_37_curated_21
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23647..25020
DNA (1374bp) protein (458aa)
acetylornithine aminotransferase n=1 Tax=Desulfospira joergensenii RepID=UPI0003B34CD5 rbh
acetylornithine transaminase rbh
Tax=CG_Syntroph_01
S5_scaffold_37_curated_22
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25032..26207
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8DAL1_9BACL rbh
hypothetical protein rbh
Tax=RBG_16_Deltaproteobacteria_49_23_curated
S5_scaffold_37_curated_trna_4
unknown

Not on your lists

comp(26250..26340)
DNA (91bp)
transferRNA Ser
S5_scaffold_37_curated_23
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26544..27068)
DNA (525bp) protein (175aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=690850 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
CMP/dCMP deaminase zinc-binding protein n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3Z3D3_DESAF
CMP/dCMP deaminase zinc-binding protein
S5_scaffold_37_curated_24
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27082..30183)
DNA (3102bp) protein (1034aa)
cold-shock DNA-binding domain-containing protein n=1 Tax=Flavobacteriaceae bacterium HQM9 RepID=UPI000248F89A rbh
Uncharacterized protein {ECO:0000313|EMBL:EEU52188.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
hypothetical protein
S5_scaffold_37_curated_25
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30330..31142)
DNA (813bp) protein (271aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3) rbh
Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q1U0_9DELT rbh
Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain {ECO:0000313|EMBL:EIG53746.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
S5_scaffold_37_curated_26
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31285..32922
DNA (1638bp) protein (546aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
CTP synthase n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7Q486_9DELT rbh
pyrG; CTP synthetase rbh
S5_scaffold_37_curated_27
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32959..33483
DNA (525bp) protein (175aa)
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7U9U3_9DELT
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family {ECO:0000313|EMBL:EPR30694.1}; TaxID=1121439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alkalitolerans DSM 16529.;"
S5_scaffold_37_curated_28
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33602..35041
DNA (1440bp) protein (480aa)
RNA polymerase sigma-54 factor n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JQX4_DESFR rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
rpoN; RNA polymerase sigma factor rbh
S5_scaffold_37_curated_29
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35082..35624
DNA (543bp) protein (181aa)
Ribosomal subunit interface protein n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GRU3_9DELT
sigma 54 modulation protein/ribosomal protein S30EA domain protein
Sigma 54 modulation protein/ribosomal protein S30EA domain protein {ECO:0000313|EMBL:BAH76077.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
Displaying items 1-30 of 190 in total

View Taxonomy