ggKbase home page

S5_scaffold_338_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S5_scaffold_338_curated_1
unknown

Not on your lists

comp(2..214)
DNA (213bp) protein (71aa)

This feature has no annotations

S5_scaffold_338_curated_2
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(226..1086)
DNA (861bp) protein (287aa)
Bifunctional protein FolD n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=FOLD_DESDG rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase rbh
S5_scaffold_338_curated_3
unknown

Not on your lists

comp(1388..1633)
DNA (246bp) protein (82aa)

This feature has no annotations

S5_scaffold_338_curated_4
Desulfobulbaceae bacterium BRH_c16a, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1984..3585
DNA (1602bp) protein (534aa)
Peptide chain release factor 3 n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TWM0_DESML rbh
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1629713 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae.;" source="Desulfobulbaceae bacterium BRH_c16a.;"
prfC; peptide chain release factor 3
S5_scaffold_338_curated_5
Desulfonatronum thiodismutans, Desulfonatronum, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3853..4302)
DNA (450bp) protein (150aa)
Heat shock protein Hsp20 n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YVM2_DESAF
Uncharacterized protein {ECO:0000313|EMBL:AIE17977.1}; TaxID=159290 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfonatronumaceae; Desulfonatronum.;" source="Desulfonatronum thiodismutans.;"
heat shock protein Hsp20
S5_scaffold_338_curated_6
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4337..4702)
DNA (366bp) protein (122aa)
Heat shock protein Hsp20 n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1K0T4_DESFR
Heat shock protein Hsp20 {ECO:0000313|EMBL:EFL49772.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
heat shock protein Hsp20 family protein
S5_scaffold_338_curated_7
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4721..5137)
DNA (417bp) protein (139aa)
Molecular chaperone (Small heat shock protein) n=1 Tax=Desulfovibrio sp. U5L RepID=I2PZA9_9DELT
Molecular chaperone (Small heat shock protein) {ECO:0000313|EMBL:EIG52865.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
heat shock protein Hsp20 family protein
S5_scaffold_338_curated_8
unknown

Not on your lists

5387..5605
DNA (219bp) protein (73aa)

This feature has no annotations

S5_scaffold_338_curated_9
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5699..7609
DNA (1911bp) protein (637aa)
Chaperone protein HtpG n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1K0T2_DESFR rbh
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
htpG; heat shock protein 90 rbh
S5_scaffold_338_curated_10
GWA2_Desulfovibrionales_65_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7944..8312
DNA (369bp) protein (123aa)
molybdopterin biosynthesis MoaE protein n=1 Tax=Desulfovibrio longus RepID=UPI0003B7B74F
molybdopterin biosynthesis protein MoaE
Tax=GWA2_Desulfovibrionales_65_9_curated
S5_scaffold_338_curated_11
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8425..8826)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XHF3_DESMR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH73921.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
S5_scaffold_338_curated_12
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9139..9792
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JWQ2_DESFR
Uncharacterized protein {ECO:0000313|EMBL:EFL51106.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
SNARE associated golgi family protein
S5_scaffold_338_curated_13
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10023..10589)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z0L9_METPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI62241.1}; TaxID=304371 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 /; SANAE).;"
S5_scaffold_338_curated_14
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10891..11976)
DNA (1086bp) protein (362aa)
Glycosyl transferase family 2 n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7Q7S8_9DELT rbh
Glycosyl transferase family 2 {ECO:0000313|EMBL:EHJ47387.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
glycosyltransferase rbh
S5_scaffold_338_curated_15
Desulfovibrio gigas, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12091..13203)
DNA (1113bp) protein (371aa)
N-acylneuraminate-9-phosphate synthase n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GGJ2_DESGI rbh
N-acylneuraminate-9-phosphate synthase rbh
N-acylneuraminate-9-phosphate synthase {ECO:0000313|EMBL:AGW15277.1}; TaxID=1121448 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio gigas DSM 1382 = ATCC 19364.;"
S5_scaffold_338_curated_16
CG_Desulfovib_01, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13200..13817)
DNA (618bp) protein (206aa)
Regulatory protein IclR n=1 Tax=Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) RepID=E6VZ93_DESAO
regulatory protein IclR
Tax=CG_Desulfovib_01
S5_scaffold_338_curated_17
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14238..15011
DNA (774bp) protein (258aa)
Fe(3+)-transporting ATPase {ECO:0000313|EMBL:EHJ46219.1}; EC=3.6.3.30 {ECO:0000313|EMBL:EHJ46219.1};; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
Fe(3+)-transporting ATPase n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QCR3_9DELT
ABC transporter ATP-binding protein
S5_scaffold_338_curated_18
GWA2_Desulfovibrionales_65_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15040..16200)
DNA (1161bp) protein (387aa)
hypothetical protein n=1 Tax=Desulfovibrio sp. Dsv1 RepID=UPI0003A2BB0A
hypothetical protein
Tax=GWA2_Desulfovibrionales_65_9_curated
S5_scaffold_338_curated_19
CG_Desulfovib_01, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16237..18507
DNA (2271bp) protein (757aa)
Putative adenylate cyclase n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XP13_DESMR rbh
adenylate cyclase rbh
Tax=CG_Desulfovib_01
S5_scaffold_338_curated_20
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18650..20062
DNA (1413bp) protein (471aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
tRNA modification GTPase MnmE n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q729_9DELT rbh
trmE; tRNA modification GTPase TrmE rbh
S5_scaffold_338_curated_21
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20130..20411
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7TU26_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPR40235.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. X2.;"
S5_scaffold_338_curated_22
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20424..21941
DNA (1518bp) protein (506aa)
Extracellular ligand-binding receptor n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JXH6_DESFR rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EFL50953.1}; Flags: Precursor;; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
ABC transporter substrate binding protein rbh
S5_scaffold_338_curated_23
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22311..22814
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI00035EDEA4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG71016.1}; TaxID=1031711 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain Po82).;"
S5_scaffold_338_curated_24
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23005..25296)
DNA (2292bp) protein (764aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; Flags: Precursor;; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
Ribonuclease R n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JXH4_DESFR rbh
rnr; ribonuclease R rbh
S5_scaffold_338_curated_25
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25335..26630)
DNA (1296bp) protein (432aa)
Response regulator receiver modulated diguanylate cyclase n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7Q8Y1_9DELT rbh
Response regulator receiver modulated diguanylate cyclase {ECO:0000313|EMBL:EHJ47467.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
response regulator receiver protein rbh
S5_scaffold_338_curated_26
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26645..28042)
DNA (1398bp) protein (466aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JTL3_DESFR
sensor histidine kinase
S5_scaffold_338_curated_27
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28156..28626
DNA (471bp) protein (157aa)
WxcM-like domain-containing protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7VBS6_9DELT
WxcM-like domain-containing protein {ECO:0000313|EMBL:EPR41928.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. X2.;"
class II aldolase/adducin family protein
S5_scaffold_338_curated_28
unknown

Not on your lists

29035..29223
DNA (189bp) protein (63aa)

This feature has no annotations

S5_scaffold_338_curated_29
CG_Desulfovib_01, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29299..31716
DNA (2418bp) protein (806aa)
PAS sensor protein n=1 Tax=Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) RepID=E6VS11_DESAO rbh
PAS sensor protein rbh
Tax=CG_Desulfovib_01
S5_scaffold_338_curated_30
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31811..33868)
DNA (2058bp) protein (686aa)
Methyl-accepting chemotaxis protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XHS9_DESMR rbh
methyl-accepting chemotaxis protein rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:BAH76453.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
Displaying items 1-30 of 48 in total

View Taxonomy