ggKbase home page

S5_scaffold_147_curated

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S5_scaffold_147_curated_1
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..282)
DNA (282bp) protein (94aa)
Relaxase/mobilization nuclease n=1 Tax=Desulfovibrio sp. U5L RepID=I2PWY1_9DELT
Relaxase/mobilization nuclease {ECO:0000313|EMBL:EIG52037.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
Relaxase/mobilization nuclease family protein (fragment)
S5_scaffold_147_curated_2
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(310..639)
DNA (330bp) protein (110aa)
Putative plasmid conjugal transfer protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QBK0_9DELT
Putative plasmid conjugal transfer protein {ECO:0000313|EMBL:EHJ48863.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
putative plasmid conjugal transfer protein
S5_scaffold_147_curated_3
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(911..1789)
DNA (879bp) protein (293aa)
Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QBK1_9DELT
Integrase family protein {ECO:0000313|EMBL:EHJ48864.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
phage integrase family protein
S5_scaffold_147_curated_trna_1
unknown

Not on your lists

1940..2013
DNA (74bp)
transferRNA Asp
S5_scaffold_147_curated_trna_2
unknown

Not on your lists

2186..2259
DNA (74bp)
transferRNA Asp
S5_scaffold_147_curated_4
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2400..3023
DNA (624bp) protein (208aa)
Uncharacterized conserved protein UCP020606 n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7Q7M3_9DELT rbh
Uncharacterized conserved protein UCP020606 {ECO:0000313|EMBL:EHJ47332.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
hypothetical protein
S5_scaffold_147_curated_5
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3122..4270
DNA (1149bp) protein (383aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XH10_DESMR rbh
icd; isocitrate dehydrogenase rbh
S5_scaffold_147_curated_6
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4545..4862)
DNA (318bp) protein (106aa)
Flagellar biosynthesis anti-sigma factor FlgM n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q2V4_9DELT
Flagellar biosynthesis anti-sigma factor FlgM {ECO:0000313|EMBL:EIG54110.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
flgM; negative regulator of flagellin synthesis
S5_scaffold_147_curated_7
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4980..5399)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JZB7_DESFR
Uncharacterized protein {ECO:0000313|EMBL:EFL50277.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
hypothetical protein
S5_scaffold_147_curated_8
Desulfovibrio sp. A2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5530..6393
DNA (864bp) protein (288aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=298701 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. A2.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Desulfovibrio sp. A2 RepID=G2H4T7_9DELT
ATP-NAD/AcoX kinase
S5_scaffold_147_curated_9
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6390..8144
DNA (1755bp) protein (585aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q2V1_9DELT rbh
Uncharacterized protein {ECO:0000313|EMBL:EIG54107.1}; Flags: Precursor;; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
hypothetical protein rbh
S5_scaffold_147_curated_10
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8437..8904
DNA (468bp) protein (156aa)
Putative transcriptional regulator, ModE family n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LE84_SYNFM
ModE family transcriptional regulator
Putative transcriptional regulator, ModE family {ECO:0000313|EMBL:ABK15736.1}; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
S5_scaffold_147_curated_11
Desulfovibrio gigas, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8927..9607)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GB48_DESGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW13356.1}; TaxID=1121448 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio gigas DSM 1382 = ATCC 19364.;"
S5_scaffold_147_curated_12
unknown

Not on your lists

comp(9694..9993)
DNA (300bp) protein (100aa)

This feature has no annotations

S5_scaffold_147_curated_13
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10136..11566
DNA (1431bp) protein (477aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1206767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus str. Maddingley MBC34.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6FNZ5_9DELT rbh
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B rbh
S5_scaffold_147_curated_14
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11579..12619
DNA (1041bp) protein (347aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
methylthioribose-1-phosphate isomerase n=1 Tax=Desulfovibrio longus RepID=UPI0003B70357 rbh
initiation factor 2B related family protein rbh
S5_scaffold_147_curated_15
BJP_08E140C01_Desulfomicrobium_58_14, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12991..13191
DNA (201bp) protein (67aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPQ7_9FIRM
thiS; thiamine biosynthesis protein, this
Tax=BJP_08E140C01_Desulfomicrobium_58_14
S5_scaffold_147_curated_16
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13195..13965
DNA (771bp) protein (257aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
Thiazole synthase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPQ6_9FIRM rbh
ThiG; hypothetical protein rbh
S5_scaffold_147_curated_17
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

14309..15412
DNA (1104bp) protein (368aa)
Thiazole biosynthesis protein ThiH n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPQ5_9FIRM rbh
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:EAX48025.1}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
thiazole biosynthesis protein ThiH rbh
S5_scaffold_147_curated_18
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15422..16039
DNA (618bp) protein (206aa)
Thiamine biosynthesis protein ThiF n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPQ4_9FIRM
Thiamine biosynthesis protein ThiF {ECO:0000313|EMBL:EAX48024.1}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
thiamine biosynthesis protein ThiF
S5_scaffold_147_curated_19
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16036..16677
DNA (642bp) protein (214aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
thiE2; thiamine-phosphate pyrophosphorylase ThiE (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPQ3_9FIRM
S5_scaffold_147_curated_20
Smithella sp. SCADC, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16705..17055
DNA (351bp) protein (117aa)
Cupin domain family protein n=1 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QD84_DESAH
Cupin {ECO:0000313|EMBL:KFO68360.1}; TaxID=1499107 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. SCADC.;"
cupin
S5_scaffold_147_curated_21
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17301..17852
DNA (552bp) protein (184aa)
Isochorismatase hydrolase n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1K2L4_DESFR
isochorismatase hydrolase
Tax=GWA2_Rhodocyclales_65_20_curated
S5_scaffold_147_curated_22
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17989..19704
DNA (1716bp) protein (572aa)
GTP-binding protein Der n=1 Tax=Desulfovibrio longus RepID=UPI0003B2E946 rbh
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
engA; GTP-binding protein EngA rbh
S5_scaffold_147_curated_23
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19845..20408)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6FL89_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KHK02402.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
hypothetical protein
S5_scaffold_147_curated_24
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20429..21349)
DNA (921bp) protein (307aa)
Periplasmic component of the Tol biopolymer transport system n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GNX1_9DELT rbh
Periplasmic component of the Tol biopolymer transport system {ECO:0000313|EMBL:EKO38635.1}; Flags: Precursor;; TaxID=1206767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus str. Maddingley MBC34.;"
hypothetical protein
S5_scaffold_147_curated_25
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21441..22811)
DNA (1371bp) protein (457aa)
Putative permease (Major facilitator superfamily) n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W0Z1_UNCMA rbh
major facilitator superfamily permease rbh
Putative permease (Major facilitator superfamily) {ECO:0000313|EMBL:CAJ37952.1}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
S5_scaffold_147_curated_26
Desulfovibrio desulfuricans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23082..25037)
DNA (1956bp) protein (652aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=641491 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio desulfuricans ND132.;"
Methionine--tRNA ligase n=1 Tax=Desulfovibrio desulfuricans ND132 RepID=F0JI25_DESDE rbh
methionyl-tRNA synthetase rbh
S5_scaffold_147_curated_27
Desulfovibrio alaskensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25040..26185)
DNA (1146bp) protein (382aa)
PSP1 domain protein n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q311K6_DESDG rbh
PSP1 domain-containing protein rbh
PSP1 domain protein {ECO:0000313|EMBL:ABB38390.1}; TaxID=207559 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans; (strain G20)).;"
S5_scaffold_147_curated_trna_3
unknown

Not on your lists

26524..26596
DNA (73bp)
transferRNA Lys
Displaying items 1-30 of 99 in total

View Taxonomy