ggKbase home page

S5_scaffold_62_curated

Search features with annotation key words

Displaying items 1-30 of 169 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S5_scaffold_62_curated_16S_1
unknown

Not on your lists

comp(3003..4998)
DNA (1996bp)
16S ribosomal RNA (16S rRNA)
S5_scaffold_62_curated_trna_3
unknown

Not on your lists

comp(3223..3295)
DNA (73bp)
transferRNA Ala
S5_scaffold_62_curated_trna_2
unknown

Not on your lists

comp(3311..3384)
DNA (74bp)
transferRNA Ile
S5_scaffold_62_curated_1
CG_Desulfovib_01, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5475..6182)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Desulfovibrio oxyclinae RepID=UPI0003676C20
CarD family transcriptional regulator
Tax=CG_Desulfovib_01
S5_scaffold_62_curated_2
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6223..6999)
DNA (777bp) protein (259aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LQ22_DESBD
Cobyrinic acid ac-diamide synthase
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ACU89048.1}; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
S5_scaffold_62_curated_3
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6996..8885)
DNA (1890bp) protein (630aa)
carbon-monoxide dehydrogenase, catalytic subunit (EC:1.2.99.2) rbh
Carbon-monoxide dehydrogenase, catalytic subunit {ECO:0000313|EMBL:ACU89049.1}; EC=1.2.99.2 {ECO:0000313|EMBL:ACU89049.1};; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
Carbon-monoxide dehydrogenase, catalytic subunit n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LQ23_DESBD rbh
S5_scaffold_62_curated_4
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9087..9494
DNA (408bp) protein (136aa)
Serine phosphatase RsbU, regulator of sigma subunit n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6FRB4_9DELT
Serine phosphatase RsbU, regulator of sigma subunit {ECO:0000313|EMBL:KHK01409.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
response regulator receiver protein
S5_scaffold_62_curated_5
unknown

Not on your lists

9687..10043
DNA (357bp) protein (119aa)

This feature has no annotations

S5_scaffold_62_curated_6
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10040..12301
DNA (2262bp) protein (754aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
CheA signal transduction histidine kinase n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7Q728_9DELT rbh
cheA; chemotaxis protein CheA rbh
S5_scaffold_62_curated_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12310..13863
DNA (1554bp) protein (518aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7US96_DESML rbh
PAS domain S-box {ECO:0000313|EMBL:CDM64094.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PAS sensor protein rbh
S5_scaffold_62_curated_8
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13860..15074
DNA (1215bp) protein (405aa)
Putative signal transduction protein n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JXG8_DESFR rbh
Putative signal transduction protein {ECO:0000313|EMBL:EFL50945.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
response regulator receiver protein rbh
S5_scaffold_62_curated_9
Desulfovibrio salexigens, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15071..16180
DNA (1110bp) protein (370aa)
Response regulator receiver protein n=1 Tax=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) RepID=C6BZY9_DESAD rbh
response regulator receiver protein rbh
Response regulator receiver protein {ECO:0000313|EMBL:ACS80860.1}; TaxID=526222 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 /; VKM B-1763).;"
S5_scaffold_62_curated_10
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16346..17707
DNA (1362bp) protein (454aa)
Diguanylate cyclase n=1 Tax=Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) RepID=E6VW65_DESAO rbh
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:KHK00322.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
diguanylate cyclase rbh
S5_scaffold_62_curated_11
Desulfonatronum thiodismutans, Desulfonatronum, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18368..19510)
DNA (1143bp) protein (381aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=159290 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfonatronumaceae; Desulfonatronum.;" source="Desulfonatronum thiodismutans.;"
gamma-glutamyl kinase (EC:2.7.2.11) rbh
Glutamate 5-kinase n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JYA0_DESFR rbh
S5_scaffold_62_curated_12
unknown

Not on your lists

comp(19676..19897)
DNA (222bp) protein (74aa)

This feature has no annotations

S5_scaffold_62_curated_13
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20022..21002
DNA (981bp) protein (327aa)
Metal dependent phosphohydrolase n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JY97_DESFR rbh
Metal dependent phosphohydrolase {ECO:0000313|EMBL:EFL50671.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
hypothetical protein rbh
S5_scaffold_62_curated_14
Desulfovibrio alaskensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21535..22359)
DNA (825bp) protein (275aa)
Peptidase M48 Ste24p n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q317I8_DESDG
peptidase M48 Ste24p
Peptidase M48 Ste24p {ECO:0000313|EMBL:ABB36908.1}; Flags: Precursor;; TaxID=207559 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans; (strain G20)).;"
S5_scaffold_62_curated_15
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22794..23447
DNA (654bp) protein (218aa)
Putative phage repressor n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3Z1X2_DESAF
putative phage repressor
Putative phage repressor {ECO:0000313|EMBL:EGJ50080.1}; TaxID=690850 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio africanus str. Walvis Bay.;"
S5_scaffold_62_curated_16
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23508..24779
DNA (1272bp) protein (424aa)
Putative Autophagy-related protein 22 n=1 Tax=Desulfovibrio sp. X2 RepID=S7VGM1_9DELT rbh
Putative Autophagy-related protein 22 {ECO:0000313|EMBL:EPR43638.1}; TaxID=941449 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. X2.;"
hypothetical protein rbh
S5_scaffold_62_curated_17
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24772..25857
DNA (1086bp) protein (362aa)
Cell division protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2PYQ1_9DELT
Cell division protein {ECO:0000313|EMBL:EIG52657.1}; Flags: Precursor;; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
S5_scaffold_62_curated_18
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25865..26875)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XIV9_DESMR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAH74123.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
S5_scaffold_62_curated_19
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27025..27543
DNA (519bp) protein (173aa)
Cell wall-associated hydrolase, invasion-associated protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2PWU0_9DELT
Cell wall-associated hydrolase, invasion-associated protein {ECO:0000313|EMBL:EIG51996.1}; Flags: Precursor;; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
NlpC/P60 family protein
S5_scaffold_62_curated_20
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27614..28129)
DNA (516bp) protein (172aa)
Probable thiol peroxidase n=1 Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q30YY6_DESDG
redoxin domain-containing protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
S5_scaffold_62_curated_21
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28294..29223
DNA (930bp) protein (310aa)
Cation diffusion facilitator family transporter n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LP95_DESBD rbh
cation diffusion facilitator family transporter rbh
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ACU91405.1}; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
S5_scaffold_62_curated_22
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29259..29675
DNA (417bp) protein (139aa)
Transcriptional regulator, MarR family n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LP94_DESBD
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ACU91404.1}; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
S5_scaffold_62_curated_23
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29687..31081
DNA (1395bp) protein (465aa)
Putative response regulator n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XIW1_DESMR rbh
response regulator rbh
Putative response regulator {ECO:0000313|EMBL:BAH74125.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
S5_scaffold_62_curated_24
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31262..32395)
DNA (1134bp) protein (378aa)
Putative glycosyltransferase n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XI24_DESMR rbh
glycosyltransferase rbh
Putative glycosyltransferase {ECO:0000313|EMBL:BAH73986.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
S5_scaffold_62_curated_25
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32409..33926)
DNA (1518bp) protein (506aa)
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6FMV5_9DELT rbh
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase {ECO:0000313|EMBL:KHK01995.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
glycosyltransferase rbh
S5_scaffold_62_curated_26
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33926..35410)
DNA (1485bp) protein (495aa)
Radical SAM domain protein n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JT35_DESFR rbh
Radical SAM domain protein {ECO:0000313|EMBL:EFL52668.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
radical SAM protein
S5_scaffold_62_curated_27
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35521..36618
DNA (1098bp) protein (366aa)
Glycosyl transferase group 1 n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JZ33_DESFR rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:EFL50316.1}; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
glycosyltransferase rbh
Displaying items 1-30 of 169 in total

View Taxonomy