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S5_scaffold_737_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S5_scaffold_737_curated_1
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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189..1262
DNA (1074bp) protein (358aa)
Putative uncharacterized protein id=1889859 bin=GWE2_Bacteroidetes_40_15 species=Runella slithyformis genus=Runella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
hypothetical protein rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
S5_scaffold_737_curated_2
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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comp(1343..2491)
DNA (1149bp) protein (383aa)
Uncharacterized protein id=3697281 bin=GWF2_Bacteroidetes_41_61 species=unknown genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118 rbh
hypothetical protein rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
S5_scaffold_737_curated_3
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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comp(2502..3410)
DNA (909bp) protein (303aa)
Putative uncharacterized protein id=1889855 bin=GWE2_Bacteroidetes_40_15 species=Capnocytophaga sp. oral taxon 338 genus=Capnocytophaga taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
hypothetical protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
S5_scaffold_737_curated_4
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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3571..3915
DNA (345bp) protein (115aa)
Putative uncharacterized protein id=3697278 bin=GWF2_Bacteroidetes_41_61 species=Psychromonas ingrahamii genus=Psychromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118
hypothetical protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
S5_scaffold_737_curated_5
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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comp(4056..5537)
DNA (1482bp) protein (494aa)
outer membrane efflux protein id=1889853 bin=GWE2_Bacteroidetes_40_15 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
membrane protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
S5_scaffold_737_curated_6
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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comp(5548..6921)
DNA (1374bp) protein (458aa)
hypothetical protein AnHS1_00666 id=4504448 bin=GWF2_Bacteroidetes_41_61 species=unknown genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118 rbh
membrane protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
S5_scaffold_737_curated_7
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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comp(6923..8404)
DNA (1482bp) protein (494aa)
Efflux transporter, RND family, MFP subunit, putative id=4504449 bin=GWF2_Bacteroidetes_41_61 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118 rbh
RND family efflux transporter mfp subunit rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
S5_scaffold_737_curated_8
GWF2_Bacteroidetes_40_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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9006..9416
DNA (411bp) protein (137aa)
Uncharacterized protein id=4185309 bin=GWF2_Bacteroidetes_40_14 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
hypothetical protein
Tax=GWF2_Bacteroidetes_40_14_curated
S5_scaffold_737_curated_9
Bacteroides cellulosilyticus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9631..10671
DNA (1041bp) protein (347aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=I8VZU4_9BACE rbh
Uncharacterized protein {ECO:0000313|EMBL:EIY31935.1}; TaxID=997874 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides cellulosilyticus CL02T12C19.;"
hypothetical protein rbh
S5_scaffold_737_curated_10
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10758..11582
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0WXH4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EJZ63953.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
S5_scaffold_737_curated_11

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12678..12884
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E7U8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE05592.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transcriptional regulator
S5_scaffold_737_curated_12
Treponema azotonutricium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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12895..16164
DNA (3270bp) protein (1090aa)
Putative helicase domain protein id=2041997 bin=GWE2_Bacteroidetes_40_15 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
putative helicase domain-containing protein rbh
Putative helicase domain protein {ECO:0000313|EMBL:AEF81119.1}; TaxID=545695 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9).;"
S5_scaffold_737_curated_13
Prevotella multisaccharivorax, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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17977..19602
DNA (1626bp) protein (542aa)
Type IIS restriction endonuclease, putative n=1 Tax=Prevotella multisaccharivorax DSM 17128 RepID=F8NAZ4_9BACT rbh
Eco57I restriction endonuclease rbh
Type IIS restriction endonuclease, putative {ECO:0000313|EMBL:EGN57902.1}; TaxID=688246 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella multisaccharivorax DSM 17128.;"
S5_scaffold_737_curated_14
Porphyromonas macacae, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(19556..20098)
DNA (543bp) protein (181aa)
Type II restriction-modification enzyme n=1 Tax=Campylobacter jejuni subsp. jejuni 1854 RepID=H8CE32_CAMJU
Type IIS restriction endonuclease subunit M {ECO:0000313|EMBL:KGN74323.1}; TaxID=28115 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas macacae.;"
putative type IIS restriction/modification enzyme
S5_scaffold_737_curated_15
Capnocytophaga canimorsus, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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20368..20982
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 12700 RepID=S3XIP9_9FLAO rbh
Resolvase family site-specific recombinase {ECO:0000313|EMBL:CEN54086.1}; TaxID=28188 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga canimorsus.;"
site-specific recombinase, DNA invertase Pin rbh
S5_scaffold_737_curated_16
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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21271..23394
DNA (2124bp) protein (708aa)
Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LV06_SYNAS rbh
cytoplasmic protein rbh
Hypothetical cytosolic protein {ECO:0000313|EMBL:ABC77917.1}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
S5_scaffold_737_curated_17
BJP_IG2158_Anaerolineales_38_74, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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23399..23611
DNA (213bp) protein (71aa)
Putative uncharacterized protein n=1 Tax=Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) RepID=D8GQ99_CLOLD
hypothetical protein
Tax=BJP_IG2158_Anaerolineales_38_74
S5_scaffold_737_curated_18
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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23771..24955
DNA (1185bp) protein (395aa)
Putative exonuclease n=1 Tax=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) RepID=A6KXN3_BACV8 rbh
exonuclease rbh
Exonuclease SbcCD, D subunit {ECO:0000313|EMBL:KDS53010.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
S5_scaffold_737_curated_19
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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24952..28032
DNA (3081bp) protein (1027aa)
Exonuclease SbcCD, C subunit n=1 Tax=Bacteroides vulgatus PC510 RepID=D4V5W4_BACVU rbh
Exonuclease SbcCD, C subunit {ECO:0000313|EMBL:EFG18772.1}; TaxID=702446 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus PC510.;"
ATP-dependent exonuclease
S5_scaffold_737_curated_trna_1
unknown

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comp(28338..28412)
DNA (75bp)
transferRNA Met
S5_scaffold_737_curated_20
BJP_IG2102_Bacteroidetes_40_12, Bacteroidetes, Bacteria

Not on your lists


comp(28496..28801)
DNA (306bp) protein (102aa)
30S ribosomal protein S10 id=4504455 bin=GWF2_Bacteroidetes_41_61 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118
30S ribosomal protein S10
Tax=BJP_IG2102_Bacteroidetes_40_12
S5_scaffold_737_curated_21
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

comp(28823..30943)
DNA (2121bp) protein (707aa)
Elongation factor G id=4504456 bin=GWF2_Bacteroidetes_41_61 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118 rbh
elongation factor G rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
S5_scaffold_737_curated_22
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists


comp(30972..31448)
DNA (477bp) protein (159aa)
30S ribosomal protein S7 id=1889844 bin=GWE2_Bacteroidetes_40_15 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
30S ribosomal protein S7
Tax=BJP_08E140C01_Bacteroidetes_41_49
S5_scaffold_737_curated_23
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists


comp(31471..31875)
DNA (405bp) protein (135aa)
30S ribosomal protein S12 id=1889843 bin=GWE2_Bacteroidetes_40_15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
30S ribosomal protein S12
Tax=BJP_08E140C01_Bacteroidetes_41_49
S5_scaffold_737_curated_24
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

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32039..32710
DNA (672bp) protein (224aa)
Ornithine aminotransferase id=1889842 bin=GWE2_Bacteroidetes_40_15 species=Porphyromonas gingivalis genus=Porphyromonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good + rbh
ornithine aminotransferase
Tax=BJP_08E140C01_Bacteroidetes_41_49
Displaying 25 items

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