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S5_scaffold_1560_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S5_scaffold_1560_curated_1
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..310
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RKE0_9RHIZ
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
rpsJ; 30S ribosomal protein S10
S5_scaffold_1560_curated_2
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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339..1097
DNA (759bp) protein (253aa)
50S ribosomal protein L3 n=1 Tax=Nitratireductor indicus C115 RepID=K2MYL6_9RHIZ rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
rplC; 50S ribosomal protein L3 rbh
S5_scaffold_1560_curated_3
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1097..1717
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TL16_9RHIZ
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
50S ribosomal protein L4/L1e
S5_scaffold_1560_curated_4
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1714..2007
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Amorphus coralli RepID=UPI000370422B
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1280946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas beringensis.;"
rplW; 50S ribosomal protein L23
S5_scaffold_1560_curated_5
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2021..2854
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Kaistia granuli RepID=UPI0003750C9E rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
rplB; 50S ribosomal protein L2 rbh
S5_scaffold_1560_curated_6
SAR116 cluster alpha proteobacterium HIMB100, Alphaproteobacteria, Proteobacteria, Bacteria

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2871..3164
DNA (294bp) protein (98aa)
30S ribosomal protein S19 n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036BC642
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=909943 species="Bacteria; Proteobacteria; Alphaproteobacteria; SAR116 cluster.;" source="SAR116 cluster alpha proteobacterium HIMB100.;"
rpsS; 30S ribosomal protein S19
S5_scaffold_1560_curated_7
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3161..3541
DNA (381bp) protein (127aa)
50S ribosomal protein L22 n=1 Tax=Kaistia granuli RepID=UPI0003665EC9
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
50S ribosomal protein L22
S5_scaffold_1560_curated_8

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3541..4260
DNA (720bp) protein (240aa)
30S ribosomal protein S3 n=1 Tax=Kaistia granuli RepID=UPI000381CF2A rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN73244.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
30S ribosomal protein S3 rbh
S5_scaffold_1560_curated_9
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4273..4686
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=RL16_METS4
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000255|HAMAP-Rule:MF_01342}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
S5_scaffold_1560_curated_10
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4710..4910
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G7G7_9RHIZ
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
rpmC; 50S ribosomal protein L29
S5_scaffold_1560_curated_11
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4921..5163
DNA (243bp) protein (81aa)
30S ribosomal protein S17 n=1 Tax=Kaistia granuli RepID=UPI0003687D58
30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
S5_scaffold_1560_curated_12
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5203..5571
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWB7_9RHIZ
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
rplN; 50S ribosomal protein L14
S5_scaffold_1560_curated_13
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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5571..5882
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IUU8_POLGS
50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
S5_scaffold_1560_curated_14
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5875..6432
DNA (558bp) protein (186aa)
50S ribosomal protein L5 n=1 Tax=Kaistia granuli RepID=UPI000372BCDA rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
rplE; 50S ribosomal protein L5
S5_scaffold_1560_curated_15
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6447..6752
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q864_METSZ
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. BRH_c22.;"
S5_scaffold_1560_curated_16
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6767..7165
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Kaistia granuli RepID=UPI00036DACB2
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
S5_scaffold_1560_curated_17
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7207..7740
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Methylopila sp. M107 RepID=UPI00036746AC
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
rplF; 50S ribosomal protein L6
S5_scaffold_1560_curated_18
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7746..8102
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=RL18_METNO
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000255|HAMAP-Rule:MF_01337}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Displaying 18 items

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