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S5_scaffold_3380_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S5_scaffold_3380_curated_1
Pseudomonas mandelii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..355
DNA (354bp) protein (118aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Pseudomonas sp. GM79 RepID=J2X2E4_9PSED
Diguanylate cyclase {ECO:0000313|EMBL:KDD65200.1}; TaxID=1419583 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mandelii PD30.;"
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
S5_scaffold_3380_curated_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(372..1148)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000366961D
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU41686.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
S5_scaffold_3380_curated_3
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1371..1826
DNA (456bp) protein (152aa)
Translation initiation factor IF-3 n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HMM4_9RHIZ
translation initiation factor 3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
S5_scaffold_3380_curated_4
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2024..2224
DNA (201bp) protein (67aa)
50S ribosomal protein L35 n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SXT7_9BRAD
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
rpmI; 50S ribosomal protein L35
S5_scaffold_3380_curated_5
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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2256..2612
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D6163E
rplT; Phenylalanyl-tRNA synthetase, alpha subunit
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
S5_scaffold_3380_curated_6
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2725..3819
DNA (1095bp) protein (365aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
phenylalanyl-tRNA synthetase subunit alpha n=1 Tax=Kaistia granuli RepID=UPI000374F092 rbh
Phenylalanyl-tRNA synthetase, alpha subunit rbh
S5_scaffold_3380_curated_7
unknown

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3881..4183
DNA (303bp) protein (101aa)

This feature has no annotations

S5_scaffold_3380_curated_8
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4201..4665
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6JFQ6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW13550.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
S5_scaffold_3380_curated_9
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4662..5297
DNA (636bp) protein (212aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037C5E3F
Displaying 9 items

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