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S9_scaffold_500_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S9_scaffold_500_curated_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..98)
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIR2_9SPHN
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
S9_scaffold_500_curated_2
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(155..2236)
DNA (2082bp) protein (694aa)
Elongation factor G n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QHD8_BRESC rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
translation elongation factor G rbh
S9_scaffold_500_curated_3
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2385..2858)
DNA (474bp) protein (158aa)
30S ribosomal protein S7 n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W9A2_9CAUL rbh
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
30S ribosomal protein S7 rbh
S9_scaffold_500_curated_4
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2925..3296)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=2 Tax=Caulobacter RepID=RS12_CAUSK
rpsL; 30S ribosomal protein S12
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
S9_scaffold_500_curated_5
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3651..4433
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QED1_BREDI
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
S9_scaffold_500_curated_6
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4469..5233)
DNA (765bp) protein (255aa)
Short chain dehydrogenase family protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QIS6_9CAUL rbh
Short chain dehydrogenase family protein {ECO:0000313|EMBL:EGF91835.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
short-chain dehydrogenase/reductase SDR
S9_scaffold_500_curated_7
unknown

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comp(5230..5319)
DNA (90bp) protein (30aa)

This feature has no annotations

S9_scaffold_500_curated_8
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5339..9535)
DNA (4197bp) protein (1399aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W9A6_9CAUL rbh
DNA-directed RNA polymerase subunit beta' rbh
S9_scaffold_500_curated_9
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9672..13790)
DNA (4119bp) protein (1373aa)
DNA-directed RNA polymerase subunit beta n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QGU0_BRESC rbh
DNA-directed RNA polymerase subunit beta rbh
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
S9_scaffold_500_curated_10
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14127..14672
DNA (546bp) protein (182aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QGJ7_BRESC
FKBP-type peptidylprolyl isomerase
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
S9_scaffold_500_curated_11
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14783..16759
DNA (1977bp) protein (659aa)
Peptidase, M61 family n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QE38_BREDI rbh
Peptidase, M61 family {ECO:0000313|EMBL:EKY25945.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
peptidase M61 domain-containing protein rbh
S9_scaffold_500_curated_12
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16845..17234)
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12 n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WEB9_9CAUL
50S ribosomal protein L7/L12
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
S9_scaffold_500_curated_13
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17301..17816)
DNA (516bp) protein (172aa)
50S ribosomal protein L10 n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WEB8_9CAUL
50S ribosomal protein L10
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
S9_scaffold_500_curated_14
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18215..20149
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QBL2_BREDI rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
S9_scaffold_500_curated_15
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20269..21741
DNA (1473bp) protein (491aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QNP7_BRESC rbh
Fis family transcriptional regulator rbh
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
S9_scaffold_500_curated_16
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21925..24078
DNA (2154bp) protein (718aa)
TonB-dependent receptor plug n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QNP8_BRESC rbh
TonB-dependent receptor plug rbh
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
Displaying 16 items

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