ggKbase home page

S9_scaffold_249_curated

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S9_scaffold_249_curated_1
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

165..1103
DNA (939bp) protein (313aa)
UPI0003CF651B related cluster n=1 Tax=unknown RepID=UPI0003CF651B rbh
Peptidase S49 {ECO:0000313|EMBL:ESW93993.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
proteinase rbh
S9_scaffold_249_curated_2
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1194..1379
DNA (186bp) protein (62aa)
membrane protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E0630A
Membrane protein {ECO:0000313|EMBL:ESW93992.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
S9_scaffold_249_curated_3
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1400..2272
DNA (873bp) protein (291aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000361AD31 rbh
4-diphosphocytidyl-2C-methyl-D-erythritol kinase rbh
S9_scaffold_249_curated_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2269..2829
DNA (561bp) protein (187aa)
Molybdenum cofactor biosynthesis protein B n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZS1_9RHIZ rbh
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
moaB; molybdenum cofactor biosynthesis protein B rbh
S9_scaffold_249_curated_5
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2938..3450)
DNA (513bp) protein (171aa)
Family 2 glycosyl transferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZR9_9RHIZ
Family 2 glycosyl transferase {ECO:0000313|EMBL:EHK53772.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
family 2 glycosyl transferase
S9_scaffold_249_curated_6
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3589..4743
DNA (1155bp) protein (385aa)
Radical SAM n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11KH1_MESSB rbh
radical SAM family protein rbh
Radical SAM {ECO:0000313|EMBL:ABG62104.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
S9_scaffold_249_curated_7
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4906..5568
DNA (663bp) protein (221aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ribonuclease H (EC:3.1.26.4)
UPI0003CEA50F related cluster n=1 Tax=unknown RepID=UPI0003CEA50F
S9_scaffold_249_curated_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5622..6101)
DNA (480bp) protein (160aa)
F0F1 ATP synthase subunit B (EC:3.6.3.14)
ATP synthase subunit b n=1 Tax=Nitratireductor indicus C115 RepID=K2NPT8_9RHIZ
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
S9_scaffold_249_curated_9
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6111..6689)
DNA (579bp) protein (193aa)
ATP synthase subunit b n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MGU4_9RHIZ
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
H+transporting two-sector ATPase subunit B/B'
S9_scaffold_249_curated_10
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6761..6985)
DNA (225bp) protein (75aa)
F0F1 ATP synthase subunit C {ECO:0000313|EMBL:EKF19926.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EKF19926.1};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
F0F1 ATP synthase subunit C (EC:3.6.3.14)
F0F1 ATP synthase subunit C n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MCM1_9RHIZ
S9_scaffold_249_curated_11
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7054..7803)
DNA (750bp) protein (250aa)
F0F1 ATP synthase subunit A (EC:3.6.3.14) rbh
ATP synthase subunit a n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MRC4_9RHIZ rbh
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
S9_scaffold_249_curated_12
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7840..8187)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11KI0_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG62095.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
S9_scaffold_249_curated_13
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8539..9717)
DNA (1179bp) protein (393aa)
Cell wall hydrolase SleB n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZR1_9RHIZ rbh
Cell wall hydrolase SleB {ECO:0000313|EMBL:EHK53764.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
cell wall hydrolyses involved in spore germination rbh
S9_scaffold_249_curated_14
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9843..11279)
DNA (1437bp) protein (479aa)
UPI0003CE159F related cluster n=1 Tax=unknown RepID=UPI0003CE159F rbh
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
engA; GTP-binding protein EngA rbh
S9_scaffold_249_curated_15
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11305..11976)
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZQ9_9RHIZ rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53762.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein rbh
S9_scaffold_249_curated_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12081..12653)
DNA (573bp) protein (191aa)
Putative transmembrane protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZQ8_9RHIZ
Putative transmembrane protein {ECO:0000313|EMBL:EHK53761.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
NnrU family protein
S9_scaffold_249_curated_17
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12799..13785
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11KI5_MESSB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABG62090.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
S9_scaffold_249_curated_18
SAR116 cluster alpha proteobacterium HIMB100, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13804..15081)
DNA (1278bp) protein (426aa)
ABC-type long-chain fatty acid transport system, fused permease and ATPase component n=1 Tax=SAR116 cluster alpha proteobacterium HIMB100 RepID=G5ZWU9_9PROT rbh
ABC-type long-chain fatty acid transport system, fused permease and ATPase component {ECO:0000313|EMBL:EHI49532.1}; TaxID=909943 species="Bacteria; Proteobacteria; Alphaproteobacteria; SAR116 cluster.;" source="SAR116 cluster alpha proteobacterium HIMB100.;"
bacA; Bacteroid development protein bacA
S9_scaffold_249_curated_19
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15241..16404)
DNA (1164bp) protein (388aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZQ5_9RHIZ rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53758.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
arabinose efflux permease family protein rbh
S9_scaffold_249_curated_20
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16484..18082)
DNA (1599bp) protein (533aa)
Choline/carnitine/betaine transporter n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N713_9RHIZ rbh
Choline/carnitine/betaine transporter {ECO:0000313|EMBL:EKF19933.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
BCCT transporter
S9_scaffold_249_curated_21
unknown

Not on your lists

comp(18310..18510)
DNA (201bp) protein (67aa)

This feature has no annotations

S9_scaffold_249_curated_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18607..19524
DNA (918bp) protein (306aa)
UPI0003CF15A3 related cluster n=1 Tax=unknown RepID=UPI0003CF15A3 rbh
Transcriptional regulator {ECO:0000313|EMBL:CDX45859.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transcriptional regulator rbh
S9_scaffold_249_curated_23
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19519..19872)
DNA (354bp) protein (118aa)
ArsC family transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B42181
ArsC family transcriptional regulator {ECO:0000313|EMBL:KJS18303.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
arsenate reductase-like protein
S9_scaffold_249_curated_24
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19917..21638
DNA (1722bp) protein (574aa)
L-fucose isomerase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3HYW9_9RHIZ rbh
L-fucose isomerase {ECO:0000313|EMBL:EMG52852.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
fucose isomerase
S9_scaffold_249_curated_25
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21635..23263
DNA (1629bp) protein (543aa)
FGGY-family pentulose kinase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JKP4_9RHIZ rbh
ribulokinase
Ribulokinase {ECO:0000313|EMBL:AJY47463.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
S9_scaffold_249_curated_26
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23923..25476)
DNA (1554bp) protein (518aa)
Flavocytochrome c n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NXT1_9BACT rbh
flavocytochrome C rbh
Tax=BJP_IG2102_Syntrophobacterales_60_12
S9_scaffold_249_curated_27
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25761..26402)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000378A1A3
TetR family transcriptional regulator
Putative transcriptional regulator, TetR-like {ECO:0000313|EMBL:CCD01364.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
S9_scaffold_249_curated_28
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26726..27856
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000362AE51 rbh
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJF70863.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
extracellular ligand-binding receptor rbh
S9_scaffold_249_curated_29
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27868..29730
DNA (1863bp) protein (621aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037F7965 rbh
Feruloyl-CoA synthase {ECO:0000313|EMBL:EJZ35522.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
long-chain-fatty-acid-CoA ligase rbh
S9_scaffold_249_curated_30
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29832..30869
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00035C210F rbh
LivH protein {ECO:0000313|EMBL:BAQ49457.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
inner-membrane translocator rbh
Displaying items 1-30 of 61 in total

View Taxonomy