ggKbase home page

S9_scaffold_669_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S9_scaffold_669_curated_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..99
DNA (99bp) protein (33aa)
tufB2; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6AUY0_RHILS
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
S9_scaffold_669_curated_trna_1
unknown

Not on your lists

281..353
DNA (73bp)
transferRNA Trp
S9_scaffold_669_curated_2
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

612..815
DNA (204bp) protein (68aa)
Protein translocase subunit SecE n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HV87_9RHIZ
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
secE; preprotein translocase subunit SecE
S9_scaffold_669_curated_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

842..1369
DNA (528bp) protein (176aa)
transcription antitermination protein NusG n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030F0A5B rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
NusG antitermination factor rbh
S9_scaffold_669_curated_4
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1504..1932
DNA (429bp) protein (143aa)
UPI0003D0052A related cluster n=1 Tax=unknown RepID=UPI0003D0052A
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
rplK; 50S ribosomal protein L11
S9_scaffold_669_curated_5
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1937..2638
DNA (702bp) protein (234aa)
50S ribosomal protein L1 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=RL1_MESSB rbh
rplA; 50S ribosomal protein L1 rbh
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
S9_scaffold_669_curated_6
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3011..3529
DNA (519bp) protein (173aa)
50S ribosomal protein L10 n=1 Tax=Hoeflea sp. 108 RepID=UPI00035EF674
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
50S ribosomal protein L10
S9_scaffold_669_curated_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3583..3960
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HV93_9RHIZ
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ribosomal protein L7/L12
S9_scaffold_669_curated_8
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4151..8287
DNA (4137bp) protein (1379aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Hoeflea sp. 108 RepID=UPI0003804411 rbh
DNA-directed RNA polymerase, beta subunit rbh
S9_scaffold_669_curated_9
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8476..12672
DNA (4197bp) protein (1399aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Rhizobium loti RepID=UPI00036831F8 rbh
S9_scaffold_669_curated_10
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12949..13311)
DNA (363bp) protein (121aa)
UPI0003CFC371 related cluster n=1 Tax=unknown RepID=UPI0003CFC371
Two component response regulator (Modular protein) {ECO:0000313|EMBL:CDX42894.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
two component response regulator
S9_scaffold_669_curated_11
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13709..14080
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HV99_9RHIZ
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
rpsL; 30S ribosomal protein S12
S9_scaffold_669_curated_12
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14163..14633
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CH63_9RHIZ
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
rpsG; ribosomal protein S7
S9_scaffold_669_curated_13
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14670..16760
DNA (2091bp) protein (697aa)
Elongation factor G n=1 Tax=Nitratireductor indicus C115 RepID=K2NY43_9RHIZ rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
fusA; elongation factor G rbh
S9_scaffold_669_curated_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16825..16935
DNA (111bp) protein (37aa)
tuf-1; elongation factor Tu 1 (EC:3.6.5.3)
Elongation factor Tu (Fragment) n=1 Tax=Rhizobium sp. Pop5 RepID=K0WJ95_9RHIZ
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Displaying 15 items

View Taxonomy