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FFSP_07262016_17_scaffold_23

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_07262016_17_scaffold_23_1
unknown

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3..209
-----------------
DNA (207bp)
protein (69aa)

This feature has no annotations

FFSP_07262016_17_scaffold_23_2
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(843..1043)
-----------------
DNA (201bp)
protein (67aa)
Phage transcriptional regulator, AlpA Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY14_HALNC
phage transcriptional regulator AlpA
Phage transcriptional regulator, AlpA {ECO:0000313|EMBL:ACX95337.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
FFSP_07262016_17_scaffold_23_3
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1493..2416)
-----------------
DNA (924bp)
protein (308aa)
Lipid A biosynthesis acyltransferase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0U0_HALNC
lipid A biosynthesis acyltransferase
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:ACX96313.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
FFSP_07262016_17_scaffold_23_4
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2409..3863)
-----------------
DNA (1455bp)
protein (485aa)
Cytochrome P450 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0U1_HALNC
cytochrome P450
Cytochrome P450 {ECO:0000313|EMBL:ACX96314.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
FFSP_07262016_17_scaffold_23_5
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3860..5410)
-----------------
DNA (1551bp)
protein (517aa)
Capsular polysaccharide biosynthesis protein Tax=Alcaligenes sp. EGD-AK7 RepID=U1YC44_9BURK
Capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:ERI32648.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-AK7.;"
rkpI; capsular polysaccharide biosynthesis/export transmembrane
FFSP_07262016_17_scaffold_23_6

Not on your lists

comp(5411..6178)
-----------------
DNA (768bp)
protein (256aa)
Short-chain dehydrogenase/reductase SDR Tax=Halomonas sp. TD01 RepID=F7SJB6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKO07650.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
short-chain dehydrogenase
FFSP_07262016_17_scaffold_23_7
Halomonas hydrothermalis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6168..7403)
-----------------
DNA (1236bp)
protein (412aa)
capsule biosynthesis protein CapA Tax=Halomonas zhanjiangensis RepID=UPI00035E6D4E
Capsule biosynthesis protein CapA {ECO:0000313|EMBL:KHJ51917.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas hydrothermalis.;"
rkpJ_kpsS_lipB_wcbO; capsule polysaccharide biosynthesis protein
FFSP_07262016_17_scaffold_23_8
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7400..8479)
-----------------
DNA (1080bp)
protein (360aa)
hypothetical protein Tax=Comamonas testosteroni RepID=UPI00036D6937
capsule polysaccharide biosynthesis protein
Capsule polysaccharide biosynthesis protein {ECO:0000313|EMBL:BAP88385.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
FFSP_07262016_17_scaffold_23_9
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8472..9620)
-----------------
DNA (1149bp)
protein (383aa)
Glycosyltransferase family protein Tax=Azoarcus sp. KH32C RepID=H0Q0T5_9RHOO
glycosyltransferase family protein
Glycosyltransferase family protein {ECO:0000313|EMBL:BAL22582.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
FFSP_07262016_17_scaffold_23_10
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9627..10796)
-----------------
DNA (1170bp)
protein (390aa)
Putative capsule polysaccharide export protein bexD Tax=Ralstonia solanacearum RepID=D8NWS4_RALSL
putative capsule polysaccharide export protein bexD
Putative capsule polysaccharide export protein bexD {ECO:0000313|EMBL:CBJ51879.2}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
FFSP_07262016_17_scaffold_23_11
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11060..12571)
-----------------
DNA (1512bp)
protein (504aa)
phosphomannomutase (EC:5.4.2.8)
hypothetical protein Tax=Comamonas testosteroni RepID=UPI0002DD6413
Phosphomannomutase {ECO:0000313|EMBL:KFD27952.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
FFSP_07262016_17_scaffold_23_12
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12582..13466)
-----------------
DNA (885bp)
protein (295aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Glucose-1-phosphate thymidylyltransferase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0V0_HALNC
glucose-1-phosphate thymidylyltransferase
FFSP_07262016_17_scaffold_23_13
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13527..14594)
-----------------
DNA (1068bp)
protein (356aa)
dTDP-glucose 4,6-dehydratase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0U8_HALNC
dTDP-glucose 4,6-dehydratase
Tax=CG_Hydro_01
FFSP_07262016_17_scaffold_23_14
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14604..15548)
-----------------
DNA (945bp)
protein (315aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:ACX96320.1}; EC=1.1.1.133 {ECO:0000313|EMBL:ACX96320.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
dTDP-4-dehydrorhamnose reductase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0U7_HALNC
FFSP_07262016_17_scaffold_23_15
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15545..16114)
-----------------
DNA (570bp)
protein (190aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ACX96319.1}; EC=5.1.3.13 {ECO:0000313|EMBL:ACX96319.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
dTDP-4-dehydrorhamnose 3,5-epimerase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0U6_HALNC
FFSP_07262016_17_scaffold_23_16
RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16147..18426)
-----------------
DNA (2280bp)
protein (760aa)
Glycosyl transferase, family 2 Tax=Burkholderia cenocepacia RepID=A0K4U8_BURCH
glycosyl transferase family protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated
FFSP_07262016_17_scaffold_23_17
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18509..19456)
-----------------
DNA (948bp)
protein (316aa)
NAD-dependent epimerase/dehydratase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6C8_NITMU
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABB75693.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
FFSP_07262016_17_scaffold_23_18
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19458..25214)
-----------------
DNA (5757bp)
protein (1919aa)
Glycosyl transferase, group 2 family protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FX38_STIAD
glycosyl transferases group 1 family protein
Glycosyl transferases group 1 family protein {ECO:0000313|EMBL:AIO46894.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
FFSP_07262016_17_scaffold_23_19
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25257..25910)
-----------------
DNA (654bp)
protein (218aa)
Capsular polysaccharide export ABC transporter, ATP-binding protein Wzt2 Tax=Burkholderia cenocepacia RepID=T0F0T3_9BURK
wzt2; putative capsular polysaccharide transporter ATP-binding protein
Putative capsular polysaccharide transporter ATP-binding protein {ECO:0000313|EMBL:CAR53566.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656; / NCTC 13227 / J2315 / CF5610) (Burkholderia cepacia (strain J2315)).;"
FFSP_07262016_17_scaffold_23_20
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25930..26724)
-----------------
DNA (795bp)
protein (265aa)
Capsular polysaccharide ABC transporter, permease protein KpsM Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NW32_9GAMM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
Capsular polysaccharide ABC transporter, permease protein KpsM
FFSP_07262016_17_scaffold_23_21
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26714..27652)
-----------------
DNA (939bp)
protein (313aa)
hypothetical protein Tax=Comamonas testosteroni RepID=UPI0002F11618
rkpR_bexC_ctrB; capsule polysaccharide biosynthesis
Capsule polysaccharide biosynthesis {ECO:0000313|EMBL:BAL22598.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
FFSP_07262016_17_scaffold_23_22
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27817..29265)
-----------------
DNA (1449bp)
protein (483aa)
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Tax=Azoarcus sp. KH32C RepID=H0Q0V2_9RHOO
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase {ECO:0000313|EMBL:BAL22599.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
FFSP_07262016_17_scaffold_23_23
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29273..30625)
-----------------
DNA (1353bp)
protein (451aa)
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:ACX96339.1}; EC=2.3.1.47 {ECO:0000313|EMBL:ACX96339.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
8-amino-7-oxononanoate synthase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0W6_HALNC
FFSP_07262016_17_scaffold_23_24
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30622..38187)
-----------------
DNA (7566bp)
protein (2522aa)
KR domain protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0W7_HALNC
KR domain protein {ECO:0000313|EMBL:ACX96340.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
KR domain-containing protein
FFSP_07262016_17_scaffold_23_25
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38603..38779)
-----------------
DNA (177bp)
protein (59aa)
Uncharacterized protein Tax=Burkholderia ambifaria IOP40-10 RepID=B1FD85_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT04461.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
FFSP_07262016_17_scaffold_23_trna_1
unknown

Not on your lists

comp(38993..39066)
-----------------
DNA (74bp)
transferRNA Arg
FFSP_07262016_17_scaffold_23_26
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39126..39314)
-----------------
DNA (189bp)
protein (63aa)
Putative uncharacterized protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYE7_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX95470.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
FFSP_07262016_17_scaffold_23_27
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39399..40667)
-----------------
DNA (1269bp)
protein (423aa)
isocitrate dehydrogenase (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Isocitrate dehydrogenase [NADP] Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYE8_HALNC
FFSP_07262016_17_scaffold_23_28
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40870..41160
-----------------
DNA (291bp)
protein (97aa)
10 kDa chaperonin Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYE9_HALNC
chaperonin Cpn10
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
FFSP_07262016_17_scaffold_23_29
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41200..42834
-----------------
DNA (1635bp)
protein (545aa)
60 kDa chaperonin Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KYF0_HALNC
chaperonin GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Displaying items 1-30 of 46 in total

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