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OR_07232018_dam_0_1um_scaffold_2012

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_2012_1
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..366
DNA (366bp) protein (122aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Lipoprotein signal peptidase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KWE3_HALNC
lipoprotein signal peptidase
OR_07232018_dam_0_1um_scaffold_2012_2
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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363..728
DNA (366bp) protein (122aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KWE2_HALNC
FKBP-type peptidylprolyl isomerase
OR_07232018_dam_0_1um_scaffold_2012_3
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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725..1657
DNA (933bp) protein (311aa)
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KWE1_HALNC
OR_07232018_dam_0_1um_scaffold_2012_4
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1654..2355)
DNA (702bp) protein (234aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KW63_HALNC
LytTR family transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ACX96966.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_2012_5
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2352..3425)
DNA (1074bp) protein (358aa)
Signal transduction histidine kinase, LytS n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KW64_HALNC
signal transduction histidine kinase LytS
Signal transduction histidine kinase, LytS {ECO:0000313|EMBL:ACX96967.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_2012_6
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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3548..4969
DNA (1422bp) protein (474aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Argininosuccinate lyase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KW65_HALNC
argininosuccinate lyase
OR_07232018_dam_0_1um_scaffold_2012_7
Idiomarina loihiensis, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5148..5402
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000380CEA4
hypothetical protein
Uncharacterized conserved membrane protein {ECO:0000313|EMBL:AAV81160.1}; TaxID=283942 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR).;"
OR_07232018_dam_0_1um_scaffold_2012_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5518..5919)
DNA (402bp) protein (134aa)
carboxylesterase (EC:3.1.1.1)
Carboxylesterase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K4A6_STEMA
Carboxylesterase {ECO:0000313|EMBL:KKD56901.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
OR_07232018_dam_0_1um_scaffold_2012_9
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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6096..6599
DNA (504bp) protein (168aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KW66_HALNC
OR_07232018_dam_0_1um_scaffold_2012_10
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7301..7888)
DNA (588bp) protein (196aa)
DNA repair protein RadC n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KW68_HALNC
DNA repair protein RadC
DNA repair protein RadC {ECO:0000313|EMBL:ACX96971.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_2012_11
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7940..8698)
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXE1_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX95155.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_2012_12
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8695..9564)
DNA (870bp) protein (290aa)
UPF0276 protein Hneap_0291 n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXE0_HALNC
hypothetical protein
UPF0276 protein Hneap_0291 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_2012_13
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9640..9927)
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KW69_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96972.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_2012_14
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9997..10680)
DNA (684bp) protein (228aa)
Anti-sigma-K factor RskA n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXD7_HALNC
anti-sigma-K factor RskA
Anti-sigma-K factor RskA {ECO:0000313|EMBL:ACX95151.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_2012_15
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10677..11324)
DNA (648bp) protein (216aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXD8_HALNC
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACX95152.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07232018_dam_0_1um_scaffold_2012_16
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11474..12322)
DNA (849bp) protein (283aa)
modD protein (EC:2.4.2.19)
Putative Nicotinate-nucleotide diphosphorylase ModD {ECO:0000313|EMBL:CDW92886.1}; EC=2.4.2.19 {ECO:0000313|EMBL:CDW92886.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
ModD protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X3P9_THIK1
Displaying 16 items

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