ggKbase home page

B_1_S1_Biohub_coassembly_k141_1880569

Search features with annotation key words

Displaying items 1-30 of 101 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_1880569_1
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

428..1120
DNA (693bp) protein (231aa)
Putative OmpR family two-component response regulator Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I2G0_CALAS
putative OmpR family two-component response regulator
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_1880569_2
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1068..2531)
DNA (1464bp) protein (488aa)
Integral membrane sensor signal transduction histidine kinase Tax=Pelobacter propionicus (strain DSM 2379) RepID=A0R7M8_PELPD
integral membrane sensor signal transduction histidine kinase
Tax=CG_Delta_03
B_1_S1_Biohub_coassembly_k141_1880569_3
unknown

Not on your lists

comp(2883..3320)
DNA (438bp) protein (146aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1880569_4
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

3902..5566
DNA (1665bp) protein (555aa)
Oligopeptide transport system substrate-binding protein Tax=Dehalococcoides mccartyi GY50 RepID=V5QCU0_9CHLR
oligopeptide transport system substrate-binding protein
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_1880569_5
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

5716..6633
DNA (918bp) protein (306aa)
Nickel-transporting ATPase Tax=Dehalococcoides mccartyi RepID=A5FQK1_DEHSB
PepT transporter family, permease
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_1880569_6
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

6644..7582
DNA (939bp) protein (313aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component Tax=Dehalococcoides mccartyi RepID=D2BI99_DEHSV
oligopeptide transport system permease protein
Peptide ABC transporter permease {ECO:0000313|EMBL:AII58099.1}; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalococcoides mccartyi CG1.;"
B_1_S1_Biohub_coassembly_k141_1880569_7
unknown

Not on your lists

comp(7949..8488)
DNA (540bp) protein (180aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1880569_8
unknown

Not on your lists

comp(8660..9475)
DNA (816bp) protein (272aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1880569_9
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

9773..10474
DNA (702bp) protein (234aa)
Two component transcriptional regulator, winged helix family Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FFJ3_CONWI
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADB53786.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
B_1_S1_Biohub_coassembly_k141_1880569_10
RBG_13_Chloroflexi_53_26_curated, Chloroflexi, Bacteria

Not on your lists

10872..12584
DNA (1713bp) protein (571aa)
ilvB; acetolactate synthase large subunit (EC:2.2.1.6)
Acetolactate synthase Tax=Dehalococcoides mccartyi RepID=A5FR34_DEHSB
Tax=RBG_13_Chloroflexi_53_26_curated
B_1_S1_Biohub_coassembly_k141_1880569_11

Not on your lists

13187..14026
DNA (840bp) protein (280aa)
Uncharacterized protein {ECO:0000313|EMBL:KKO11138.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Putative uncharacterized protein bin=GWA2_OP3_52_12 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
B_1_S1_Biohub_coassembly_k141_1880569_12
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

14358..14681
DNA (324bp) protein (108aa)
Vitamin K epoxide reductase Tax=Nitrolancetus hollandicus Lb RepID=I4EK09_9CHLR
Vitamin K epoxide reductase {ECO:0000313|EMBL:CCF85021.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
vitamin K epoxide reductase
B_1_S1_Biohub_coassembly_k141_1880569_13
unknown

Not on your lists

14708..14932
DNA (225bp) protein (75aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1880569_14
RBG_13_Chloroflexi_53_26_curated, Chloroflexi, Bacteria

Not on your lists

15149..16402
DNA (1254bp) protein (418aa)
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003704974
Tax=RBG_13_Chloroflexi_53_26_curated
B_1_S1_Biohub_coassembly_k141_1880569_15
RBG_19FT_COMBO_Chloroflexi_48_23_curated, Chloroflexi, Bacteria

Not on your lists

16402..18093
DNA (1692bp) protein (564aa)
det:DET0964 recJ; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
recJ; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-)
Tax=RBG_19FT_COMBO_Chloroflexi_48_23_curated
B_1_S1_Biohub_coassembly_k141_1880569_16

Not on your lists

comp(18502..19167)
DNA (666bp) protein (222aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK58523.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
two component transcriptional regulator, LuxR family bin=bin9_gal15 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
two component transcriptional regulator, LuxR family
B_1_S1_Biohub_coassembly_k141_1880569_17
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(19171..20634)
DNA (1464bp) protein (488aa)
GAF sensor signal transduction histidine kinase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C657_SPHTD
GAF sensor signal transduction histidine kinase
GAF sensor signal transduction histidine kinase {ECO:0000313|EMBL:ACZ37595.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
B_1_S1_Biohub_coassembly_k141_1880569_18

Not on your lists

comp(20722..21462)
DNA (741bp) protein (247aa)
Maleate cis-trans isomerase Tax=uncultured Chloroflexi bacterium HF0500_03M05 RepID=E0XY61_9CHLR
Maleate cis-trans isomerase {ECO:0000313|EMBL:ADI19352.1}; species="Bacteria; Chloroflexi; environmental samples.;" source="uncultured Chloroflexi bacterium HF0500_03M05.;"
Asp/Glu/hydantoin racemase
B_1_S1_Biohub_coassembly_k141_1880569_19
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21462..22652)
DNA (1191bp) protein (397aa)
glycine oxidase (EC:1.4.3.19)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003656994
Uncharacterized protein {ECO:0000313|EMBL:ETW95460.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
B_1_S1_Biohub_coassembly_k141_1880569_20
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22665..23498)
DNA (834bp) protein (278aa)
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.20)
hypothetical protein, partial Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003829040
Tax=RBG_16_Deltaproteobacteria_48_10_curated
B_1_S1_Biohub_coassembly_k141_1880569_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23624..24565
DNA (942bp) protein (314aa)
hypothetical protein Tax=alpha proteobacterium SCGC AAA536-G10 RepID=UPI000368870D
cyclase SCIF3.09c
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
B_1_S1_Biohub_coassembly_k141_1880569_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

24640..25440
DNA (801bp) protein (267aa)
hypothetical protein bin=bin7_NC10_sister species=Desulfotomaculum nigrificans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
Tax=CSP1_6_Rokubacteria
B_1_S1_Biohub_coassembly_k141_1880569_23
R_NC10_66_22, NC10, Bacteria

Not on your lists

25460..26140
DNA (681bp) protein (227aa)
Putative uncharacterized protein bin=GWC2_Nitrospirae_57_13 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
B_1_S1_Biohub_coassembly_k141_1880569_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

26152..28098
DNA (1947bp) protein (649aa)
NADH:flavin oxidoreductase/NADH oxidase bin=GWC2_Methylomirabilis_70_24 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
NADH:flavin oxidoreductase
Tax=GWA2_Rokubacteria_70_23_curated
B_1_S1_Biohub_coassembly_k141_1880569_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(28109..28879)
DNA (771bp) protein (257aa)
enoyl-CoA hydratase Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003749727
enoyl-CoA hydratase
Tax=CSP1_6_Rokubacteria
B_1_S1_Biohub_coassembly_k141_1880569_26
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(29247..30200)
DNA (954bp) protein (318aa)
hypothetical protein Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI00035F1073
ATPase
ATPase associated with various cellular activities, AAA_3 {ECO:0000313|EMBL:ABQ89109.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
B_1_S1_Biohub_coassembly_k141_1880569_27
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(30197..32839)
DNA (2643bp) protein (881aa)
hypothetical protein Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI00035EEE5A
transglutaminase domain-containing protein
Tax=RBG_13_Chloroflexi_54_9_curated
B_1_S1_Biohub_coassembly_k141_1880569_28
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(32841..34079)
DNA (1239bp) protein (413aa)
hypothetical protein Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI0003774F8F
hypothetical protein
Tax=RBG_16_Chloroflexi_57_9_curated
B_1_S1_Biohub_coassembly_k141_1880569_29
unknown

Not on your lists

comp(34076..34900)
DNA (825bp) protein (275aa)
hypothetical protein Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI00035DDD5C
B_1_S1_Biohub_coassembly_k141_1880569_30
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(35075..35878)
DNA (804bp) protein (268aa)
Alpha/beta hydrolase fold protein Tax=Frankia sp. EUN1f RepID=D3CYG8_9ACTO
alpha/beta hydrolase fold domain-containing protein
Tax=RBG_16_Chloroflexi_68_14_curated
Displaying items 1-30 of 101 in total

View Taxonomy