ggKbase home page

B_1_S1_Biohub_coassembly_k141_936068

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_936068_1
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

3..2192
DNA (2190bp) protein (730aa)
Lipopolysaccharide biosynthesis Tax=Hydrogenophaga sp. PBC RepID=I4MT80_9BURK
capsular exopolysaccharide family protein
Tax=RBG_16_Planctomycetes_59_8_curated
B_1_S1_Biohub_coassembly_k141_936068_2
Burkholderia grimmiae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2192..4801
DNA (2610bp) protein (870aa)
TPR repeat-containing protein Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DC87_SINAD
tetratricopeptide repeat protein
Uncharacterized protein {ECO:0000313|EMBL:KDR25406.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia grimmiae.;"
B_1_S1_Biohub_coassembly_k141_936068_3
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

comp(4967..6178)
DNA (1212bp) protein (404aa)
hypothetical protein Tax=Schlesneria paludicola RepID=UPI00029A7A6B
hypothetical protein
Tax=RBG_16_Planctomycetes_59_8_curated
B_1_S1_Biohub_coassembly_k141_936068_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6446..7387)
DNA (942bp) protein (314aa)
Diguanylate cyclase (GGDEF) domain-containing protein bin=GWC2_Methylomirabilis_70_16 species=Desulfovibrio sp. U5L genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
diguanylate cyclase
Tax=GWC2_Rokubacteria_70_16_curated
B_1_S1_Biohub_coassembly_k141_936068_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7384..9777)
DNA (2394bp) protein (798aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035C6A19
PAS domain S-box {ECO:0000313|EMBL:KCZ71447.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
PAS domain S-box
B_1_S1_Biohub_coassembly_k141_936068_6
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(9960..10673)
DNA (714bp) protein (238aa)
Glycosyl transferase family 2 Tax=Opitutaceae bacterium TAV5 RepID=H1IMX1_9BACT
glycosyl transferase
Glycosyl transferase {ECO:0000313|EMBL:AHF92811.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
B_1_S1_Biohub_coassembly_k141_936068_7
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

10724..11704
DNA (981bp) protein (327aa)
Exoribonuclease YhaM {ECO:0000313|EMBL:KHE93816.1}; EC=3.1.-.- {ECO:0000313|EMBL:KHE93816.1};; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="Candidatus Scalindua brodae.;"
Strongly similar to exoribonuclease YhaM bin=GWA2_Planctomycetia_40_7 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
metal dependent phosphohydrolase
B_1_S1_Biohub_coassembly_k141_936068_8
unknown

Not on your lists

11866..12783
DNA (918bp) protein (306aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_936068_9
unknown

Not on your lists

12854..13696
DNA (843bp) protein (281aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_936068_10
unknown

Not on your lists

comp(13698..14150)
DNA (453bp) protein (151aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_936068_11
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(14159..14869)
DNA (711bp) protein (237aa)
Demethylmenaquinone methyltransferase Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0STI1_PLABD
ubiquinone/menaquinone biosynthesis methyltransferase ubiE
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
B_1_S1_Biohub_coassembly_k141_936068_12
R_WOR_2_63_39, WOR-2, Bacteria

Not on your lists

15067..15585
DNA (519bp) protein (173aa)
Putative uncharacterized protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
B_1_S1_Biohub_coassembly_k141_936068_13
Pyrococcus yayanosii, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(15571..16080)
DNA (510bp) protein (170aa)
hypothetical protein, partial Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI00035F10D1
Histidine triad (HIT) protein (hit)
Histidine triad (HIT) protein (Hit) {ECO:0000313|EMBL:AEH25168.1}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus yayanosii (strain CH1 / JCM 16557).;"
B_1_S1_Biohub_coassembly_k141_936068_trna_1
unknown

Not on your lists

comp(16386..16457)
DNA (72bp)
transferRNA Gly
B_1_S1_Biohub_coassembly_k141_936068_14
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

comp(16513..17430)
DNA (918bp) protein (306aa)
Serine/threonine protein kinase with PASTA sensor(S) Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EYQ0_CONWI
serine/threonine protein kinase with PASTA sensor(s)
Tax=RBG_16_Planctomycetes_59_8_curated
B_1_S1_Biohub_coassembly_k141_936068_15
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

comp(17435..18211)
DNA (777bp) protein (259aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01UG6_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
Tax=RBG_16_Planctomycetes_59_8_curated
B_1_S1_Biohub_coassembly_k141_936068_16
unknown

Not on your lists

comp(18437..18766)
DNA (330bp) protein (110aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_936068_17
RBG_16_Armatimonadetes_58_9_curated, Armatimonadetes, Bacteria

Not on your lists

comp(18772..20043)
DNA (1272bp) protein (424aa)
SerS; seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 RepID=U5CEB1_THEYO
Tax=RBG_16_Armatimonadetes_58_9_curated
B_1_S1_Biohub_coassembly_k141_936068_18
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

20080..20931
DNA (852bp) protein (284aa)
Rhomboid family protein Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SF61_PLABD
rhomboid family protein
Tax=RBG_16_Planctomycetes_59_8_curated
B_1_S1_Biohub_coassembly_k141_936068_19
unknown

Not on your lists

20928..21752
DNA (825bp) protein (275aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_936068_20
unknown

Not on your lists

comp(21953..23080)
DNA (1128bp) protein (376aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_936068_21
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23670..24560)
DNA (891bp) protein (297aa)
Metal-dependent phosphohydrolase, HD subdomain bin=GWF2_Lentisphaerae_52_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
metal dependent phosphohydrolase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
B_1_S1_Biohub_coassembly_k141_936068_22
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(24739..26367)
DNA (1629bp) protein (543aa)
60 kDa chaperonin Tax=Chthoniobacter flavus Ellin428 RepID=B4D8F1_9BACT
chaperonin GroL
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
B_1_S1_Biohub_coassembly_k141_936068_23
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26466..26849)
DNA (384bp) protein (128aa)
Putative OmpR family two-component response regulator Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZP2_CALAS
Two-component system response regulator {ECO:0000313|EMBL:AEK42245.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
putative OmpR family two-component response regulator
B_1_S1_Biohub_coassembly_k141_936068_24
R_NC10_66_22, NC10, Bacteria

Not on your lists

27079..28515
DNA (1437bp) protein (479aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-)
3-octaprenyl-4hydroxybenzoate decarboxylase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01ZK3_SOLUE
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
B_1_S1_Biohub_coassembly_k141_936068_25
unknown

Not on your lists

28709..29113
DNA (405bp) protein (135aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_936068_26
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29150..30973)
DNA (1824bp) protein (608aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=S9PP03_9DELT
Uncharacterized protein {ECO:0000313|EMBL:AKF86887.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_936068_27
RIFOXYB2_FULL_RIF07_49_35_curated, RIF7, Bacteria

Not on your lists

comp(31084..31935)
DNA (852bp) protein (284aa)
Oligopeptide ABC transporter, permease protein Tax=Cellvibrio sp. BR RepID=I3IAV5_9GAMM
binding-protein-dependent transport system inner membrane protein
Tax=RIFOXYB2_FULL_RIF07_49_35_curated
B_1_S1_Biohub_coassembly_k141_936068_28
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

comp(31932..32450)
DNA (519bp) protein (173aa)
Oligopeptide transport system permease protein OppB Tax=Rhodopirellula maiorica SM1 RepID=M5RKY4_9PLAN
oppB; oligopeptide transport system permease OppB
Tax=RBG_16_Planctomycetes_59_8_curated
Displaying 29 items

View Taxonomy