ggKbase home page

B_1_S1_Biohub_coassembly_k141_1622844

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_1622844_1
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(229..1314)
DNA (1086bp) protein (362aa)
Magnesium and cobalt transport protein CorA bin=GWB2_Proteobacteria_55_19 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
magnesium transporter
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
B_1_S1_Biohub_coassembly_k141_1622844_2
unknown

Not on your lists

comp(1372..1512)
DNA (141bp) protein (47aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1622844_trna_1
unknown

Not on your lists

1593..1665
DNA (73bp)
transferRNA Thr
B_1_S1_Biohub_coassembly_k141_1622844_3
R_Planctomycetes_50_16, Planctomycetes, Bacteria

Not on your lists

1715..2917
DNA (1203bp) protein (401aa)
TufB2; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu-B Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=EFTU2_THETN
Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
B_1_S1_Biohub_coassembly_k141_1622844_4
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists


2927..3091
DNA (165bp) protein (55aa)
50S ribosomal protein L33 Tax=Mycoplasma wenyonii (strain Massachusetts) RepID=I6ZFM4_MYCWM
50S ribosomal protein L33
Tax=RBG_16_Planctomycetes_59_8_curated
B_1_S1_Biohub_coassembly_k141_1622844_trna_2
unknown

Not on your lists

3185..3258
DNA (74bp)
transferRNA Trp
B_1_S1_Biohub_coassembly_k141_1622844_5
RBG_16_Planctomycetes_41_13_curated, Planctomycetes, Bacteria

Not on your lists

3322..3801
DNA (480bp) protein (160aa)
Protein translocase subunit SecE Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q134_9BACT
preprotein translocase subunit SecE
Tax=RBG_16_Planctomycetes_41_13_curated
B_1_S1_Biohub_coassembly_k141_1622844_6
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

3808..4362
DNA (555bp) protein (185aa)
Transcription termination/antitermination protein NusG Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q133_9BACT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
transcription termination/antitermination factor NusG
B_1_S1_Biohub_coassembly_k141_1622844_7
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists


4498..4923
DNA (426bp) protein (142aa)
50S ribosomal protein L11 Tax=planctomycete KSU-1 RepID=I3IM48_9PLAN
50S ribosomal protein L11
Tax=RBG_16_Planctomycetes_43_13_curated
B_1_S1_Biohub_coassembly_k141_1622844_8
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists


5047..5730
DNA (684bp) protein (228aa)
50S ribosomal protein L1 Tax=planctomycete KSU-1 RepID=I3IM49_9PLAN
50S ribosomal protein L1
Tax=RBG_16_Planctomycetes_43_13_curated
B_1_S1_Biohub_coassembly_k141_1622844_9
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists


5743..6273
DNA (531bp) protein (177aa)
50S ribosomal protein L10 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGC4_9FIRM
50S ribosomal protein L10
Tax=RBG_16_Planctomycetes_43_13_curated
B_1_S1_Biohub_coassembly_k141_1622844_10
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists


6332..6757
DNA (426bp) protein (142aa)
50S ribosomal protein L7/L12 Tax=uncultured Acidobacteria bacterium RepID=H5SBQ5_9BACT
50S ribosomal protein L7/L12
Tax=RBG_16_Planctomycetes_43_13_curated
B_1_S1_Biohub_coassembly_k141_1622844_11
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists

6937..10596
DNA (3660bp) protein (1220aa)
DNA-directed RNA polymerase subunit beta Tax=planctomycete KSU-1 RepID=I3IM52_9PLAN
DNA-directed RNA polymerase subunit beta
Tax=RBG_16_Planctomycetes_43_13_curated
B_1_S1_Biohub_coassembly_k141_1622844_12
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists

10601..14701
DNA (4101bp) protein (1367aa)
DNA-directed RNA polymerase subunit beta' bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
DNA-directed RNA polymerase subunit beta''
Tax=RBG_16_Planctomycetes_43_13_curated
B_1_S1_Biohub_coassembly_k141_1622844_13
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists


14835..15212
DNA (378bp) protein (126aa)
30S ribosomal protein S12 Tax=planctomycete KSU-1 RepID=I3IM54_9PLAN
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
30S ribosomal protein S12
B_1_S1_Biohub_coassembly_k141_1622844_14
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists


15338..15808
DNA (471bp) protein (157aa)
30S ribosomal protein S7 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLH5_9PLAN
30S ribosomal protein S7
Tax=RBG_16_Planctomycetes_43_13_curated
B_1_S1_Biohub_coassembly_k141_1622844_15
unknown

Not on your lists

15915..16853
DNA (939bp) protein (313aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1622844_16
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(16863..17789)
DNA (927bp) protein (309aa)
Putative uncharacterized protein bin=GWC2_Chloroflexi_73_18 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
Tax=CG_Arma_01
B_1_S1_Biohub_coassembly_k141_1622844_17
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

17833..19029
DNA (1197bp) protein (399aa)
FAD dependent oxidoreductase bin=GWF2_Lentisphaerae_57_35 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
putative oxidoreductase
Tax=RBG_13_Acidobacteria_68_16_curated
B_1_S1_Biohub_coassembly_k141_1622844_18
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19035..19631)
DNA (597bp) protein (199aa)
Uncharacterized protein Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q4C9_STANL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADD40089.1}; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
B_1_S1_Biohub_coassembly_k141_1622844_19
unknown

Not on your lists

comp(19993..20274)
DNA (282bp) protein (94aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1622844_20
unknown

Not on your lists

20311..22176
DNA (1866bp) protein (622aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1622844_21
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22230..22580)
DNA (351bp) protein (117aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI000367338A
DNA polymerase III subunit alpha
Tax=RBG_13_Deltaproteobacteria_61_14_curated
B_1_S1_Biohub_coassembly_k141_1622844_22
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22580..25240)
DNA (2661bp) protein (887aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
DNA polymerase III subunit alpha (EC:2.7.7.7)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI000367338A
B_1_S1_Biohub_coassembly_k141_1622844_23
unknown

Not on your lists

25453..25638
DNA (186bp) protein (62aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_1622844_24
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

25866..26438
DNA (573bp) protein (191aa)
Putative uncharacterized protein bin=CD_OP8_4m species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Tax=RBG_16_Planctomycetes_59_8_curated
B_1_S1_Biohub_coassembly_k141_1622844_25
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26481..27632)
DNA (1152bp) protein (384aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair bin=GWA1_Treponema_62_8 species=Sphaerochaeta pleomorpha genus=Sphaerochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA1_Treponema_62_8 organism_group=Spirochaetes
DNA polymerase IV
Tax=RBG_13_Deltaproteobacteria_61_14_curated
B_1_S1_Biohub_coassembly_k141_1622844_26
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists

comp(27869..29146)
DNA (1278bp) protein (426aa)
HAMP domain-containing protein,cache domain-containing protein Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HG37_METFS
HAMP domain-containing protein,cache domain-containing protein
Tax=RBG_16_Planctomycetes_43_13_curated
B_1_S1_Biohub_coassembly_k141_1622844_27
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(29139..31346)
DNA (2208bp) protein (736aa)
Stage II sporulation protein E Tax=Parabacteroides merdae RepID=A7AJ84_9PORP
Serine phosphatase RsbU regulator sigma subunit
Tax=RBG_16_Zixibacteria_53_22_curated
B_1_S1_Biohub_coassembly_k141_1622844_28
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

31492..33558
DNA (2067bp) protein (689aa)
translation elongation factor G; K02355 elongation factor G bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
translation elongation factor 2 (EF-2/EF-G)
Tax=RBG_16_Planctomycetes_59_8_curated
Displaying items 1-30 of 47 in total

View Taxonomy