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B_1_S1_Biohub_coassembly_k141_2079136

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_2079136_1
Geminocystis sp. NIES-3708, Geminocystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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70..1287
DNA (1218bp) protein (406aa)
Uncharacterized protein {ECO:0000313|EMBL:BAQ63154.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Geminocystis.;" source="Geminocystis sp. NIES-3708.;"
B_1_S1_Biohub_coassembly_k141_2079136_2
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1938..3089
DNA (1152bp) protein (384aa)
Uncharacterized protein Tax=Pseudomonas aeruginosa RepID=U8BEE2_PSEAI
Putative uncharacterized protein {ECO:0000313|EMBL:ACD39283.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_2079136_trna_2
unknown

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comp(3241..3313)
DNA (73bp)
transferRNA Ala
B_1_S1_Biohub_coassembly_k141_2079136_3
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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comp(3412..4122)
DNA (711bp) protein (237aa)
Ribonuclease 3 Tax=Dehalococcoides mccartyi RepID=D2BI67_DEHSV
ribonuclease
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2079136_trna_1
unknown

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4241..4311
DNA (71bp)
transferRNA Gln
B_1_S1_Biohub_coassembly_k141_2079136_4

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4334..5056
DNA (723bp) protein (241aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM14310.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_2079136_5
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

5587..5874
DNA (288bp) protein (96aa)
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2079136_6
unknown

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comp(6270..6440)
DNA (171bp) protein (57aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_2079136_7
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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comp(6487..6882)
DNA (396bp) protein (132aa)
Tax=RBG_16_Chloroflexi_50_9_curated
B_1_S1_Biohub_coassembly_k141_2079136_8

Not on your lists

7063..7428
DNA (366bp) protein (122aa)
Uncharacterized protein Tax=Dehalococcoides mccartyi BTF08 RepID=M1QRN6_9CHLR
Marine sediment metagenome DNA, contig: S03H2_L03715 {ECO:0000313|EMBL:GAH45026.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_2079136_9

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7507..7869
DNA (363bp) protein (121aa)
Putative uncharacterized protein Tax=Dehalococcoides sp. (strain VS) RepID=D2BGF4_DEHSV
Marine sediment metagenome DNA, contig: S06H3_S01472 {ECO:0000313|EMBL:GAI21875.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_2079136_10
RBG_13_Chloroflexi_60_13_curated, Chloroflexi, Bacteria

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9032..9514
DNA (483bp) protein (161aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1C5_DEHLB
ECF subfamily RNA polymerase, sigma-24 subunit
Tax=RBG_13_Chloroflexi_60_13_curated
B_1_S1_Biohub_coassembly_k141_2079136_11
unknown

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9492..10361
DNA (870bp) protein (290aa)
Coiled-coil Y protein Tax=Drosophila virilis RepID=B4YUR3_DROVI
hypothetical protein
B_1_S1_Biohub_coassembly_k141_2079136_12
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

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10634..10849
DNA (216bp) protein (72aa)
Putative uncharacterized protein Tax=Dehalococcoides RepID=A5FPN9_DEHSB bin=RBG2 species=unknown genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2079136_13
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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11062..11760
DNA (699bp) protein (233aa)
Phosphoribosyltransferase Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K315_DEHLB
phosphoribosyltransferase
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_2079136_14
RBG_13_Chloroflexi_56_8b_curated, Chloroflexi, Bacteria

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11761..12372
DNA (612bp) protein (204aa)
Dephospho-CoA kinase Tax=Dehalococcoides ethenogenes (strain 195) RepID=COAE_DEHE1
dephospho-CoA kinase
Tax=RBG_13_Chloroflexi_56_8b_curated
B_1_S1_Biohub_coassembly_k141_2079136_15

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comp(12349..13323)
DNA (975bp) protein (325aa)
hypothetical protein Tax=Atribacteria bacterium JGI 0000059-I14 RepID=UPI0003760ADC
Marine sediment metagenome DNA, contig: S06H3_C00543 {ECO:0000313|EMBL:GAH99695.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
heat shock protein
B_1_S1_Biohub_coassembly_k141_2079136_16
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

13734..14504
DNA (771bp) protein (257aa)
prepilin peptidase (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
prepilin peptidase (EC:3.4.23.43)
Tax=RBG_16_Chloroflexi_51_9_curated
B_1_S1_Biohub_coassembly_k141_2079136_17

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14665..15330
DNA (666bp) protein (222aa)
Marine sediment metagenome DNA, contig: S12H4_L00562 {ECO:0000313|EMBL:GAI77336.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
LuxR family two component transcriptional regulator bin=bin9_gal15 species=Sulfobacillus acidophilus genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
two component LuxR family transcriptional regulator
B_1_S1_Biohub_coassembly_k141_2079136_18
CG_Dehalo_01, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

15916..16188
DNA (273bp) protein (91aa)
hypothetical protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
transcriptional regulator
Tax=CG_Dehalo_01
B_1_S1_Biohub_coassembly_k141_2079136_19
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

16581..17159
DNA (579bp) protein (193aa)
Putative membrane protein Tax=Dehalococcoides mccartyi RepID=M1QWQ5_9CHLR
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:AGG08331.1}; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalococcoides mccartyi BTF08.;"
B_1_S1_Biohub_coassembly_k141_2079136_20
Dehalogenimonas sp. WBC-2, Dehalogenimonas, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

17176..18798
DNA (1623bp) protein (541aa)
GH3 auxin-responsive promoter Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1C7_DEHLB
GH3-like protein {ECO:0000313|EMBL:AKG53064.1}; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalogenimonas.;" source="Dehalogenimonas sp. WBC-2.;"
GH3 auxin-responsive promoter
B_1_S1_Biohub_coassembly_k141_2079136_21
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

Not on your lists

19093..21159
DNA (2067bp) protein (689aa)
GGDEF domain protein Tax=Dehalococcoides sp. (strain VS) RepID=D2BIX5_DEHSV
GGDEF domain-containing protein
Tax=RBG_13_Chloroflexi_46_14_curated
B_1_S1_Biohub_coassembly_k141_2079136_22

Not on your lists

21162..21788
DNA (627bp) protein (209aa)
LuxR family transcriptional regulator Tax=Nocardiopsis halotolerans RepID=UPI00034881F0
Marine sediment metagenome DNA, contig: S12H4_C00636 {ECO:0000313|EMBL:GAI67093.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
LuxR family transcriptional regulator
B_1_S1_Biohub_coassembly_k141_2079136_23

Not on your lists

21972..22826
DNA (855bp) protein (285aa)
Two component transcriptional regulator, LuxR family Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NID9_ROSCS
Marine sediment metagenome DNA, contig: S12H4_C00636 {ECO:0000313|EMBL:GAI67094.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
two component LuxR family transcriptional regulator
B_1_S1_Biohub_coassembly_k141_2079136_24

Not on your lists

22922..23419
DNA (498bp) protein (166aa)
Uncharacterized protein Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3W4_DEHLB
Marine sediment metagenome DNA, contig: S12H4_L00920 {ECO:0000313|EMBL:GAI82227.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_2079136_25
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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23456..24844
DNA (1389bp) protein (463aa)
HI0933 family protein bin=GWC2_Syntrophobacterales_56_13 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
flavoprotein, HI0933 family
Tax=GWC2_Syntrophus_56_31_curated
B_1_S1_Biohub_coassembly_k141_2079136_26
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

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comp(24831..25427)
DNA (597bp) protein (199aa)
Maf protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=PER_GWE2_38_7 genus=PER_GWE2_38_7 taxon_order=PER_GWE2_38_7 taxon_class=PER_GWE2_38_7 phylum=PER tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
maf protein
Tax=RBG_16_Chloroflexi_57_8_curated
B_1_S1_Biohub_coassembly_k141_2079136_27
unknown

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25640..26374
DNA (735bp) protein (245aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_2079136_28

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comp(26509..27372)
DNA (864bp) protein (288aa)
Prephenate dehydrogenase Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z995_DEHE1
Marine sediment metagenome DNA, contig: S03H2_L00352 {ECO:0000313|EMBL:GAH36052.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
prephenate dehydrogenase
Displaying items 1-30 of 58 in total

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