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B_1_S1_Biohub_coassembly_k141_3405210

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
B_1_S1_Biohub_coassembly_k141_3405210_1
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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200..1201
DNA (1002bp) protein (334aa)
Sodium/calcium exchanger membrane region Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9TGY6_CALOO
sodium/calcium exchanger membrane protein
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP69546.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
B_1_S1_Biohub_coassembly_k141_3405210_2
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

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comp(1409..2536)
DNA (1128bp) protein (376aa)
mmdB; putative methylmalonyl-CoA decarboxylase beta-subunit (EC:4.1.1.41)
Putative methylmalonyl-CoA decarboxylase beta-subunit Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N1L2_ANATU
Tax=RBG_16_Chloroflexi_57_9_curated
B_1_S1_Biohub_coassembly_k141_3405210_3
Pyrococcus horikoshii, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(2544..2966)
DNA (423bp) protein (141aa)
149aa long hypothetical methylmalonyl-CoA decarboxylase gamma chain Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O59021_PYRHO
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
149aa long hypothetical methylmalonyl-CoA decarboxylase gamma chain {ECO:0000313|EMBL:BAA30387.1}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /; NBRC 100139 / OT-3).;"
B_1_S1_Biohub_coassembly_k141_3405210_4
unknown

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comp(2968..3264)
DNA (297bp) protein (99aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_3405210_5

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comp(3285..4067)
DNA (783bp) protein (261aa)
Marine sediment metagenome DNA, contig: S12H4_S06947 {ECO:0000313|EMBL:GAJ01535.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
DNA repair protein RecO
B_1_S1_Biohub_coassembly_k141_3405210_6

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comp(4109..4711)
DNA (603bp) protein (201aa)
Marine sediment metagenome DNA, contig: S01H1_S26479 {ECO:0000313|EMBL:GAG30285.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
recombination protein RecR; K06187 recombination protein RecR bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
recombination protein RecR
B_1_S1_Biohub_coassembly_k141_3405210_7

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comp(4730..5044)
DNA (315bp) protein (105aa)
UPF0133 protein N47_H23170 Tax=uncultured Desulfobacterium sp. RepID=E1YAA1_9DELT bin=RBG2 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG2 organism_group=Chloroflexi
Marine sediment metagenome DNA, contig: S06H3_L05888 {ECO:0000313|EMBL:GAI10252.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_3405210_8
RBG_13_Chloroflexi_51_36_curated, Chloroflexi, Bacteria

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comp(5041..6747)
DNA (1707bp) protein (569aa)
dev:DhcVS_524 DNA polymerase III, gamma and tau subunits; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
dnaX; DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
Tax=RBG_13_Chloroflexi_51_36_curated
B_1_S1_Biohub_coassembly_k141_3405210_9
RBG_19FT_COMBO_Chloroflexi_48_23_curated, Chloroflexi, Bacteria

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comp(6744..7199)
DNA (456bp) protein (152aa)
Probable rRNA maturation factor Tax=Dehalococcoides RepID=RRMF_DEHSC bin=RBG2 species=unknown genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_48_23_curated
B_1_S1_Biohub_coassembly_k141_3405210_10

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7366..8013
DNA (648bp) protein (216aa)
Uncharacterized protein Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=K7S8N2_TEPAE
Uncharacterized protein {ECO:0000313|EMBL:KKN10834.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
B_1_S1_Biohub_coassembly_k141_3405210_11
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

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8019..8744
DNA (726bp) protein (242aa)
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
5,10-methylenetetrahydrofolate reductase Tax=Methanosarcina mazei RepID=M1PUL1_METMZ
Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
B_1_S1_Biohub_coassembly_k141_3405210_12
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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8748..10667
DNA (1920bp) protein (640aa)
Thiamine pyrophosphate enzyme domain protein TPP-binding Tax=Thermosipho melanesiensis (strain BI429 / DSM 12029) RepID=A6LL56_THEM4
thiamine pyrophosphate binding domain-containing protein
Tax=RBG_16_Micrarchaeota_36_9_curated
B_1_S1_Biohub_coassembly_k141_3405210_13
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

10664..11254
DNA (591bp) protein (197aa)
Pyruvate ferredoxin/flavodoxin oxidoreductase Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=A3DL94_STAMF
pyruvate ferredoxin/flavodoxin oxidoreductase
Tax=RBG_13_Chloroflexi_51_52_curated
B_1_S1_Biohub_coassembly_k141_3405210_14
unknown

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comp(11310..11756)
DNA (447bp) protein (149aa)

This feature has no annotations

B_1_S1_Biohub_coassembly_k141_3405210_15

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comp(11973..12197)
DNA (225bp) protein (75aa)
Marine sediment metagenome DNA, contig: S06H3_S25167 {ECO:0000313|EMBL:GAI47410.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
B_1_S1_Biohub_coassembly_k141_3405210_16
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

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comp(12178..13401)
DNA (1224bp) protein (408aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZQ9_CALAS
hypothetical protein
Tax=RBG_13_Chloroflexi_54_9_curated
B_1_S1_Biohub_coassembly_k141_3405210_17
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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13538..14371
DNA (834bp) protein (278aa)
Enoyl-CoA hydratase/isomerase family protein bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
enoyl-CoA hydratase
Tax=RBG_16_Chloroflexi_68_14_curated
B_1_S1_Biohub_coassembly_k141_3405210_18
Thermoanaerobacter kivui, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14537..15451)
DNA (915bp) protein (305aa)
mjaIIIR; type-2 restriction enzyme MjaIII (EC:3.1.21.4)
Type-2 restriction enzyme MjaIII {ECO:0000313|EMBL:AIS51687.1}; EC=3.1.21.4 {ECO:0000313|EMBL:AIS51687.1};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter kivui (Acetogenium kivui).;"
Type II site-specific deoxyribonuclease Tax=Thermoanaerobacter italicus (strain DSM 9252 / Ab9) RepID=D3T761_THEIA
B_1_S1_Biohub_coassembly_k141_3405210_19
R_Nitrospinae_39_10, Nitrospinae, Bacteria

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comp(15456..16436)
DNA (981bp) protein (327aa)
DNA methylase N-4/N-6 domain-containing protein bin=GWC2_Deltaproteobacteria_42_51 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
DNA methylase N-4/N-6 domain-containing protein
Tax=RIFCSPLOWO2_01_FULL_Nitrospinae_39_10_curated
Displaying 19 items

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