ggKbase home page

GD18-4_B1_scaffold_530395

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GD18-4_B1_scaffold_530395_1
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(2..1129)
-----------------
DNA (1128bp)
protein (376aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPV4_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF41096.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
GD18-4_B1_scaffold_530395_2
R_OP3X_63_14, OP3X, Bacteria

Not on your lists

1316..2215
-----------------
DNA (900bp)
protein (300aa)
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI00036E6FEF
agmH; Lysophospholipase AgmH
Tax=RIFCSPHIGHO2_02_FULL_OP3X_63_14_curated
GD18-4_B1_scaffold_530395_3
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(2363..3193)
-----------------
DNA (831bp)
protein (277aa)
Alpha/beta hydrolase fold-containing protein n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UJL4_9CYAN
Alpha/beta hydrolase fold-containing protein {ECO:0000313|EMBL:EGK86459.1}; TaxID=756067 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus FGP-2.;"
alpha/beta hydrolase
GD18-4_B1_scaffold_530395_4
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3207..4790)
-----------------
DNA (1584bp)
protein (528aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FUG8_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN98631.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
GD18-4_B1_scaffold_530395_5
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4790..6229)
-----------------
DNA (1440bp)
protein (480aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YBM8_SORCE
Putative zinc protease {ECO:0000313|EMBL:AKF08152.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
GD18-4_B1_scaffold_530395_6
unknown

Not on your lists

6505..7749
-----------------
DNA (1245bp)
protein (415aa)

This feature has no annotations

GD18-4_B1_scaffold_530395_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

7769..9130
-----------------
DNA (1362bp)
protein (454aa)
Major facilitator superfamily MFS_1 n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z016_DESAT
major facilitator superfamily MFS_1
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
GD18-4_B1_scaffold_530395_8
unknown

Not on your lists

9127..9396
-----------------
DNA (270bp)
protein (90aa)

This feature has no annotations

GD18-4_B1_scaffold_530395_9
unknown

Not on your lists

comp(9458..9718)
-----------------
DNA (261bp)
protein (87aa)

This feature has no annotations

GD18-4_B1_scaffold_530395_10
unknown

Not on your lists

comp(9844..10269)
-----------------
DNA (426bp)
protein (142aa)

This feature has no annotations

GD18-4_B1_scaffold_530395_11
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10266..11000)
-----------------
DNA (735bp)
protein (245aa)
ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FFY4_SORC5
ECF family RNA polymerase sigma factor
ECF-family RNA polymerase sigma factor {ECO:0000313|EMBL:CAN98067.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
GD18-4_B1_scaffold_530395_12
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11051..12223)
-----------------
DNA (1173bp)
protein (391aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YCQ1_SORCE
thiouridylase
GD18-4_B1_scaffold_530395_13
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12274..12807)
-----------------
DNA (534bp)
protein (178aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9EPI6_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN90986.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
GD18-4_B1_scaffold_530395_14
unknown

Not on your lists

comp(12859..13428)
-----------------
DNA (570bp)
protein (190aa)

This feature has no annotations

GD18-4_B1_scaffold_530395_15
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13445..14938)
-----------------
DNA (1494bp)
protein (498aa)
Putative secreted protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FV29_SORC5
hypothetical protein
Putative secreted protein {ECO:0000313|EMBL:CAN92231.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
GD18-4_B1_scaffold_530395_16
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

15219..16070
-----------------
DNA (852bp)
protein (284aa)
SH3 type 3 domain protein n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B822_HERA2
SH3 type 3 domain-containing protein
SH3 type 3 domain protein {ECO:0000313|EMBL:ABX05955.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
GD18-4_B1_scaffold_530395_17
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16499..17299)
-----------------
DNA (801bp)
protein (267aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
Methionine aminopeptidase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XGA6_SORCE
Map
GD18-4_B1_scaffold_530395_18
unknown

Not on your lists

comp(17353..17925)
-----------------
DNA (573bp)
protein (191aa)

This feature has no annotations

GD18-4_B1_scaffold_530395_19
unknown

Not on your lists

17998..18519
-----------------
DNA (522bp)
protein (174aa)

This feature has no annotations

GD18-4_B1_scaffold_530395_20
unknown

Not on your lists

18516..18740
-----------------
DNA (225bp)
protein (75aa)

This feature has no annotations

GD18-4_B1_scaffold_530395_21
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18989..19165)
-----------------
DNA (177bp)
protein (59aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YBY1_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP40323.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_530395_22
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19186..20667)
-----------------
DNA (1482bp)
protein (494aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IF83_ANADE
Transcriptional regulatory protein ZraR {ECO:0000313|EMBL:GAO03307.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
two component sigma54 specific Fis family transcriptional regulator
GD18-4_B1_scaffold_530395_23
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20667..21908)
-----------------
DNA (1242bp)
protein (414aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XW43_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP36125.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
GD18-4_B1_scaffold_530395_24
unknown

Not on your lists

21951..22142
-----------------
DNA (192bp)
protein (64aa)

This feature has no annotations

GD18-4_B1_scaffold_530395_25
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22111..22902
-----------------
DNA (792bp)
protein (264aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G0G9_SORC5
Beta-ketoadipate enol-lactone hydrolase {ECO:0000313|EMBL:EYF04012.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
GD18-4_B1_scaffold_530395_26
unknown

Not on your lists

comp(22920..24449)
-----------------
DNA (1530bp)
protein (510aa)

This feature has no annotations

GD18-4_B1_scaffold_530395_27
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24593..25609
-----------------
DNA (1017bp)
protein (339aa)
Uncharacterized protein {ECO:0000313|EMBL:EYF04986.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
Displaying 27 items

View Taxonomy