ggKbase home page

GD18-4_B1_scaffold_478291

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GD18-4_B1_scaffold_478291_1
R_WWE3_40_23, WWE3, Bacteria

Not on your lists

134..415
DNA (282bp) protein (94aa)
PhdYeFM id=85322 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RIFCSPHIGHO2_01_FULL_WWE3_40_23_curated
GD18-4_B1_scaffold_478291_2
GWC2_OP11_ACD12_35_12, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

423..674
DNA (252bp) protein (84aa)
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:KKP66347.1}; TaxID=1618485 species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWC2_35_12.;"
addiction module antitoxin id=4260 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
addiction module antitoxin
GD18-4_B1_scaffold_478291_3
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

679..1350
DNA (672bp) protein (224aa)
UPI00006C21E7 related cluster n=1 Tax=unknown RepID=UPI00006C21E7
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
GD18-4_B1_scaffold_478291_4

Not on your lists

1462..1911
DNA (450bp) protein (150aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU77607.1}; TaxID=1618845 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_64.;"
hypothetical protein
GD18-4_B1_scaffold_478291_5
R_RIF_OD1_11_45_35, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1950..2594
DNA (645bp) protein (215aa)
TPR repeat-containing protein n=1 Tax=Arthrospira sp. PCC 8005 RepID=H1WCR2_9CYAN
TPR Domain containing protein
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_45_35_curated
GD18-4_B1_scaffold_478291_6
R_OD1_Magasanikbacteria_47_14, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

2704..3051
DNA (348bp) protein (116aa)
transmembrane_regions 7..29 id=133461 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_47_14_curated
GD18-4_B1_scaffold_478291_7
CG_CPR10_01, CG_CPR10, Bacteria

Not on your lists

comp(3150..4997)
DNA (1848bp) protein (616aa)
Polysaccharide biosynthesis protein CapD id=3501607 bin=GWA1_ZB2_49_26 species=Desulfitobacterium metallireducens genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
polysaccharide biosynthesis protein CapD
Tax=CG_CPR10_01
GD18-4_B1_scaffold_478291_8
GWA1_OD1_49_17_curated, Parcubacteria, Bacteria

Not on your lists

comp(5072..6259)
DNA (1188bp) protein (396aa)
DegT/DnrJ/EryC1/StrS aminotransferase id=3501605 bin=GWA1_ZB2_49_26 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
pyridoxal phosphate-dependent protein
Tax=GWA1_OD1_49_17_curated
GD18-4_B1_scaffold_478291_9

Not on your lists

comp(6328..7569)
DNA (1242bp) protein (414aa)
Aromatic amino acid aminotransferase {ECO:0000313|EMBL:KKT89054.1}; TaxID=1618877 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_45_10.;"
Aromatic amino acid aminotransferase id=3501601 bin=GWA1_ZB2_49_26 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
class I/II aminotransferase
GD18-4_B1_scaffold_478291_10

Not on your lists

comp(7566..8066)
DNA (501bp) protein (167aa)
1-deoxy-xylulose 5-phosphate synthase id=3501599 bin=GWA1_ZB2_49_26 species=Eubacterium plexicaudatum genus=Eubacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
1-deoxy-xylulose 5-phosphate synthase {ECO:0000313|EMBL:KKW14316.1}; TaxID=1618853 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_50_10.;"
transketolase
GD18-4_B1_scaffold_478291_11
RBG_13_RIF_OD1_07_42_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(8054..8830)
DNA (777bp) protein (259aa)
Transketolase id=3501597 bin=GWA1_ZB2_49_26 species=unknown genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
transketolase domain-containing protein
Tax=RBG_13_RIF_OD1_07_42_11_curated
GD18-4_B1_scaffold_478291_12

Not on your lists

comp(8838..9428)
DNA (591bp) protein (197aa)
Sugar transferase id=3501594 bin=GWA1_ZB2_49_26 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Sugar transferase {ECO:0000313|EMBL:KKW14314.1}; TaxID=1618853 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_50_10.;"
sugar transferase
GD18-4_B1_scaffold_478291_13
R_OD1_Uhrbacteria_46_25, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

9493..9738
DNA (246bp) protein (82aa)
Tax=RIFCSPLOWO2_02_FULL_OD1_Uhrbacteria_46_25_curated
GD18-4_B1_scaffold_478291_14
R_OD1_Uhrbacteria_46_25, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

9745..10002
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Arthrospira platensis NIES-39 RepID=D5A4B8_SPIPL id=43609 bin=ACD38 species=Arthrospira platensis genus=Arthrospira taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RIFCSPLOWO2_02_FULL_OD1_Uhrbacteria_46_25_curated
Displaying 14 items

View Taxonomy