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GOSHIP-P18_170_1_13_153S_1017m_2_604

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GOSHIP-P18_170_1_13_153S_1017m_2_604_1
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..354
-----------------
DNA (354bp)
protein (118aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
GOSHIP-P18_170_1_13_153S_1017m_2_604_2
RIFCSPLOWO2_12_FULL_PLX_64_10_curated, Bacteria

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729..1634
-----------------
DNA (906bp)
protein (302aa)
phytanoyl-CoA dioxygenase
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B78CEB
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
GOSHIP-P18_170_1_13_153S_1017m_2_604_3
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1793..2821
-----------------
DNA (1029bp)
protein (343aa)
NADP-dependent oxidoreductase
NADP-dependent oxidoreductase n=1 Tax=Pseudomonas sp. S9 RepID=UPI0002556CFD
NADP-dependent oxidoreductase {ECO:0000313|EMBL:AHL76205.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_4
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3287..3898
-----------------
DNA (612bp)
protein (204aa)
hypothetical protein
glutathione S-transferase domain-containing protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002887413
KY49.ctg7180000000022_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP16241.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_5
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3902..4726
-----------------
DNA (825bp)
protein (275aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Molecular chaperone DnaJ n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GRC6_9BRAD
Enoyl-CoA hydratase {ECO:0000313|EMBL:KJC51475.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_6
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4834..6021
-----------------
DNA (1188bp)
protein (396aa)
putative recemase
racemase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000372AC02
Racemase {ECO:0000313|EMBL:KGT77956.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6061..6903
-----------------
DNA (843bp)
protein (281aa)
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QED0_RHOPT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACE99409.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_8
Aeromonas diversa, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6928..7755)
-----------------
DNA (828bp)
protein (276aa)
putative maleylacetoacetate isomerase
Maleylacetoacetate isomerase n=1 Tax=Aeromonas diversa 2478-85 RepID=N9TZC2_9GAMM
Maleylacetoacetate isomerase {ECO:0000313|EMBL:ENY71474.1}; TaxID=1268237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas diversa 2478-85.;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_9
RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7978..8916
-----------------
DNA (939bp)
protein (313aa)
luciferase family protein
Luciferase family protein id=3842152 bin=GWF2_Methylomirabilis_70_14 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
GOSHIP-P18_170_1_13_153S_1017m_2_604_10
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8937..9632)
-----------------
DNA (696bp)
protein (232aa)
hypothetical protein
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036AB672
Uncharacterized protein {ECO:0000313|EMBL:KJS45186.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_11
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9814..10419
-----------------
DNA (606bp)
protein (202aa)
glutathione S-transferase domain-containing protein
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA015-N04 RepID=UPI00035DA1BA
Putative glutathione S-transferase protein {ECO:0000313|EMBL:KHQ53356.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_12
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10504..11808
-----------------
DNA (1305bp)
protein (435aa)
hom; homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IMP4_RHOCS
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_13
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11865..12314
-----------------
DNA (450bp)
protein (150aa)
hypothetical protein
membrane protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A90118
Multicopper oxidase {ECO:0000313|EMBL:KHQ52129.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(12438..13163)
-----------------
DNA (726bp)
protein (242aa)
isochorismatase hydrolase
Isochorismatase hydrolase n=1 Tax=Pseudomonas sp. VLB120 RepID=U5VEQ9_9PSED
Isochorismatase {ECO:0000313|EMBL:KIC94038.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_15
uncultured SAR11 cluster alpha proteobacterium H17925_23J24, Pelagibacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13332..14201)
-----------------
DNA (870bp)
protein (290aa)
sodium:bile acid symporter family protein
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AB-629-F11 RepID=UPI00036D1A2C
Predicted Na+-dependent transporter {ECO:0000313|EMBL:ADH42946.1}; TaxID=715036 species="Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; environmental samples.;" source="uncultured SAR11 cluster alpha proteobacterium H17925_23J24.;"
GOSHIP-P18_170_1_13_153S_1017m_2_604_16
unknown

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14374..14838
-----------------
DNA (465bp)
protein (155aa)

This feature has no annotations

GOSHIP-P18_170_1_13_153S_1017m_2_604_17
unknown

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comp(14887..15378)
-----------------
DNA (492bp)
protein (164aa)

This feature has no annotations

GOSHIP-P18_170_1_13_153S_1017m_2_604_18
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15546..17396)
-----------------
DNA (1851bp)
protein (617aa)
quinoprotein ethanol dehydrogenase
quinoprotein ethanol dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003658E2D
Dehydrogenase {ECO:0000313|EMBL:KJB95015.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Displaying 18 items

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