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GOSHIP-P18_170_1_13_153S_1017m_2_627

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GOSHIP-P18_170_1_13_153S_1017m_2_627_1
Parvularcula bermudensis, Parvularcula, Parvularculales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..229
-----------------
DNA (228bp)
protein (76aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TFM4_PARBH
Uncharacterized protein {ECO:0000313|EMBL:ADM10584.1}; TaxID=314260 species="Bacteria; Proteobacteria; Alphaproteobacteria; Parvularculales; Parvularculaceae; Parvularcula.;" source="Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC; 12087).;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(304..1503)
-----------------
DNA (1200bp)
protein (400aa)
aliphatic amidase expression-regulating protein
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037382E3
Putative aliphatic amidase expression-regulating protein {ECO:0000313|EMBL:CDX54735.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_3
RIFOXYD12_FULL_Rhodospirillales_60_8_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1507..2613)
-----------------
DNA (1107bp)
protein (369aa)
hypothetical protein
DNA recombination protein RmuC n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B4CA76
Tax=RIFOXYD12_FULL_Rhodospirillales_60_8_curated
GOSHIP-P18_170_1_13_153S_1017m_2_627_4
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2737..3246
-----------------
DNA (510bp)
protein (170aa)
peptide deformylase
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00037468A2
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_5
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3418..4344
-----------------
DNA (927bp)
protein (309aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JZN8_9PROT
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4352..5092
-----------------
DNA (741bp)
protein (247aa)
truA; tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) (EC:4.2.1.70)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036309C0
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_7
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5155..5658)
-----------------
DNA (504bp)
protein (168aa)
hypothetical protein n=1 Tax=Thalassospira lucentensis RepID=UPI0003B43DC7
Uncharacterized protein {ECO:0000313|EMBL:EKF10445.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_8
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5709..6881)
-----------------
DNA (1173bp)
protein (391aa)
dapE; succinyl-diaminopimelate desuccinylase (SDAP)
Succinyl-diaminopimelate desuccinylase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AIA6_AZOBR
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_9
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6956..7417
-----------------
DNA (462bp)
protein (154aa)
conserved protein of unknown function
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GP55_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKV26927.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_10
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7421..7783
-----------------
DNA (363bp)
protein (121aa)
Rieske [2Fe-2S] domain-containing protein
Rieske [2Fe-2S] domain protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IPP0_RHOCS
Rieske [2Fe-2S] domain protein {ECO:0000313|EMBL:ACI99742.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_11
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7835..9775
-----------------
DNA (1941bp)
protein (647aa)
acsA; acetyl-coenzyme A synthetase
Acetyl-coenzyme A synthetase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AEA3_AZOBR
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_12
unknown

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9802..10143
-----------------
DNA (342bp)
protein (114aa)

This feature has no annotations

GOSHIP-P18_170_1_13_153S_1017m_2_627_13
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10273..11763
-----------------
DNA (1491bp)
protein (497aa)
glpK; glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=GLPK_RHOCS
Glycerol kinase {ECO:0000255|HAMAP-Rule:MF_00186}; EC=2.7.1.30 {ECO:0000255|HAMAP-Rule:MF_00186};; ATP:glycerol 3-phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000255|HAMAP-Rule:MF_00186}; Short=GK {ECO:0000255|HAMAP-Rule:MF_00186};; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_14
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11821..13023
-----------------
DNA (1203bp)
protein (401aa)
hypothetical protein
enolase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00035EC134
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:EHR04719.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_15
Bacillus azotoformans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(13053..13595)
-----------------
DNA (543bp)
protein (181aa)
redox protein, regulator of disulfide bond formation
OsmC family protein n=1 Tax=Bacillus azotoformans LMG 9581 RepID=K6CJ05_BACAZ
OsmC family protein {ECO:0000313|EMBL:EKN71120.1}; TaxID=1131731 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus azotoformans LMG 9581.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_16
unknown

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comp(13585..13719)
-----------------
DNA (135bp)
protein (45aa)

This feature has no annotations

GOSHIP-P18_170_1_13_153S_1017m_2_627_17
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13673..14266)
-----------------
DNA (594bp)
protein (198aa)
recR; Recombination protein RecR
Recombination protein RecR n=1 Tax=Oceanibaculum indicum P24 RepID=K2JKI4_9PROT
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_18
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14307..14627)
-----------------
DNA (321bp)
protein (107aa)
Conserved protein of unknown function
Nucleoid-associated protein C882_2602 n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HQG3_9PROT
Nucleoid-associated protein C882_2602 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_19
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14624..16366)
-----------------
DNA (1743bp)
protein (581aa)
dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits (EC:2.7.7.7)
DNA-directed DNA polymerase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TY23_9PROT
DNA-directed DNA polymerase {ECO:0000313|EMBL:CAM75530.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
GOSHIP-P18_170_1_13_153S_1017m_2_627_20
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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16607..17431
-----------------
DNA (825bp)
protein (275aa)
nudC; NADH pyrophosphatase
Peroxisomal NADH pyrophosphatase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JUV0_9PROT
Peroxisomal NADH pyrophosphatase {ECO:0000313|EMBL:EWY39200.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Displaying 20 items

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