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S4JAR1_26

Alias: S4JAR1_121

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S4JAR1_26_1
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(1..594)
DNA (594bp) protein (198aa)
SNARE associated Golgi protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHQ6_9EURY (db=UNIREF evalue=4.0e-61 bit_score=237.0 identity=58.2 coverage=93.9393939393939)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=194)
transmembrane_regions (db=TMHMM db_id=tmhmm from=148 to=167)
S4JAR1_26_2
unknown

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comp(640..1572)
DNA (933bp) protein (311aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=16 to=30)
S4JAR1_26_3
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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1634..2656
DNA (1023bp) protein (341aa)
Translation factor pelota n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHQ5_9EURY (db=UNIREF evalue=1.0e-118 bit_score=430.0 identity=61.58 coverage=99.1202346041056)
translation factor pelota
seg (db=Seg db_id=seg from=240 to=251)
pelota: probable translation factor pelota (db=HMMTigr db_id=TIGR00111 from=1 to=339 evalue=6.5e-43 interpro_id=IPR004405 interpro_description=Probable translation factor pelota GO=Biological Process: translation (GO:0006412))
S4JAR1_26_4
unknown

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comp(2687..3733)
DNA (1047bp) protein (349aa)
2687..3733 - (rbs_motif=GGT rbs_spacer=4bp)
S4JAR1_26_5
unknown

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3897..4007
DNA (111bp) protein (37aa)
3897..4007 + (rbs_motif=GGTG rbs_spacer=8bp)
S4JAR1_26_6

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4048..4401
DNA (354bp) protein (118aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHP7_9EURY (db=UNIREF evalue=2.0e-22 bit_score=108.0 identity=56.84 coverage=79.6610169491525)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=8 to=100 evalue=4.2e-06)
Uncharacterized protein {ECO:0000313|EMBL:EQD44706.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
S4JAR1_26_7
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(4430..4777)
DNA (348bp) protein (116aa)
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGK7_9EURY (db=UNIREF evalue=4.0e-23 bit_score=110.0 identity=58.7 coverage=75.8620689655172)
DNA-methyltransferase
MGMT (db=PatternScan db_id=PS00374 from=67 to=73 evalue=0.0 interpro_id=IPR001497 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO=Molecular Function: methylated-DNA-[protein]-cysteine S-methyltransferase activity (GO:0003908), Biological Process: DNA repair (GO:0006281))
ogt: methylated-DNA-[protein]-cysteine S-met (db=HMMTigr db_id=TIGR00589 from=17 to=97 evalue=1.3e-30 interpro_id=IPR014048 interpro_description=Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
S4JAR1_26_8
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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4840..5754
DNA (915bp) protein (305aa)
Branched-chain amino acid aminotransferase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIT1_9EURY (db=UNIREF evalue=7.0e-127 bit_score=456.0 identity=71.05 coverage=99.344262295082)
branched-chain amino acid aminotransferase (EC:2.6.1.42)
branched-chain amino acid aminotransferase (EC:2.6.1.42)
ilvE_I: branched-chain amino acid aminotrans (db=HMMTigr db_id=TIGR01122 from=9 to=304 evalue=1.5e-148 interpro_id=IPR005785 interpro_description=Branched-chain amino acid aminotransferase I GO=Molecular Function: branched-chain-amino-acid transaminase activity (GO:0004084), Biological Process: branched chain family amino acid metabolic process (GO:0009081))
S4JAR1_26_9
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(5760..6116)
DNA (357bp) protein (119aa)
Aminoacyl-tRNA hydrolase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIT2_9EURY (db=UNIREF evalue=2.0e-48 bit_score=194.0 identity=79.31 coverage=96.6386554621849)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
PEPTIDYL-TRNA HYDROLASE 2 (db=HMMPanther db_id=PTHR12649 from=1 to=118 evalue=1.9e-41)
PTH2 (db=HMMPfam db_id=PF01981 from=3 to=118 evalue=1.7e-40 interpro_id=IPR002833 interpro_description=Peptidyl-tRNA hydrolase, PTH2 GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045), Biological Process: translation (GO:0006412))
S4JAR1_26_10

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6301..6816
DNA (516bp) protein (172aa)
hypothetical protein
seg (db=Seg db_id=seg from=121 to=132)
seg (db=Seg db_id=seg from=6 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=140 to=162)
S4JAR1_26_11
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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6928..9681
DNA (2754bp) protein (918aa)
AAA ATPase central domain protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIS6_9EURY (db=UNIREF evalue=0.0 bit_score=967.0 identity=55.58 coverage=98.1481481481482)
hypothetical protein
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=209 to=231)
S4JAR1_26_12
unknown

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comp(9692..10453)
DNA (762bp) protein (254aa)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=152 to=252 evalue=3.4e-07 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
S4JAR1_26_13
Acidiplasma sp. MBA-1, Acidiplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(10463..11311)
DNA (849bp) protein (283aa)
NADH-dependent oxidoreductase (EC:1.6.-.-)
NADH-dependent oxidoreductase n=1 Tax=Picrophilus torridus DSM 9790 RepID=Q6L130_PICTO (db=UNIREF evalue=2.0e-50 bit_score=202.0 identity=37.86 coverage=97.8798586572438)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=3 to=221 evalue=7.7e-33)
3 BETA-HYDROXYSTEROID DEHYDROGENASE (db=HMMPanther db_id=PTHR10366:SF20 from=6 to=179 evalue=3.7e-21)
S4JAR1_26_14
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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11571..12152
DNA (582bp) protein (194aa)
Isochorismatase hydrolase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHA3_9EURY (db=UNIREF evalue=3.0e-63 bit_score=244.0 identity=61.46 coverage=97.9381443298969)
isochorismatase family protein
no description (db=Gene3D db_id=G3DSA:3.40.50.850 from=9 to=192 evalue=1.9e-49 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Isochorismatase-like hydrolases (db=superfamily db_id=SSF52499 from=1 to=192 evalue=1.2e-46 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
S4JAR1_26_15

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12710..13141
DNA (432bp) protein (144aa)
Translation initiation factor IF2/IF5 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHZ1_9EURY (db=UNIREF evalue=3.0e-49 bit_score=197.0 identity=63.19 coverage=98.6111111111111)
translation initiation factor aIF-2 subunit beta
no description (db=HMMSmart db_id=SM00653 from=29 to=137 evalue=7.3e-33 interpro_id=IPR002735 interpro_description=Translation initiation factor IF2/IF5 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
eIF-5_eIF-2B (db=HMMPfam db_id=PF01873 from=18 to=137 evalue=2.0e-30 interpro_id=IPR002735 interpro_description=Translation initiation factor IF2/IF5 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
S4JAR1_26_16
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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13149..13469
DNA (321bp) protein (107aa)
translation initiation factor aIF-1A
no description (db=HMMSmart db_id=SM00652 from=23 to=106 evalue=5.2e-30 interpro_id=IPR001253 interpro_description=Translation initiation factor 1A (eIF-1A) GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=8 to=105 evalue=9.9e-24 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=8 to=106 evalue=2.9e-23 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
S4JAR1_26_17
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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13514..14734
DNA (1221bp) protein (407aa)
Orc1/cdc6 family replication initiation protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHZ3_9EURY (db=UNIREF evalue=1.0e-171 bit_score=606.0 identity=72.7 coverage=98.2800982800983)
cdc6; archaeal cell division control protein 6
seg (db=Seg db_id=seg from=264 to=278)
seg (db=Seg db_id=seg from=233 to=237)
S4JAR1_26_18
unknown

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14743..15267
DNA (525bp) protein (175aa)
RNase_P_p30 (db=HMMPfam db_id=PF01876 from=82 to=167 evalue=1.9e-05 interpro_id=IPR002738 interpro_description=RNase P subunit p30 GO=Molecular Function: ribonuclease activity (GO:0004540), Biological Process: tRNA processing (GO:0008033))
S4JAR1_26_19
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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15280..15612
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHZ5_9EURY (db=UNIREF evalue=7.0e-15 bit_score=82.8 identity=43.96 coverage=80.1801801801802)
coiled-coil (db=Coil db_id=coil from=10 to=31 evalue=NA)
RNase_P_Rpp14 (db=HMMPfam db_id=PF01900 from=7 to=99 evalue=7.1e-10 interpro_id=IPR002759 interpro_description=Ribonuclease P-related GO=Molecular Function: ribonuclease activity (GO:0004540), Biological Process: tRNA processing (GO:0008033))
Putative uncharacterized protein {ECO:0000313|EMBL:EET89569.1}; TaxID=425595 species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
S4JAR1_26_20
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(15589..15903)
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIS5_9EURY (db=UNIREF evalue=2.0e-18 bit_score=94.4 identity=40.4 coverage=93.3333333333333)
Putative uncharacterized protein {ECO:0000313|EMBL:EET89849.1}; TaxID=425595 species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
S4JAR1_26_21
unknown

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16047..16550
DNA (504bp) protein (168aa)
coiled-coil (db=Coil db_id=coil from=111 to=132 evalue=NA)
S4JAR1_26_22
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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16709..17404
DNA (696bp) protein (232aa)
Proteasome subunit alpha n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHZ8_9EURY (db=UNIREF evalue=3.0e-111 bit_score=404.0 identity=81.82 coverage=99.1379310344828)
proteasome subunit alpha (EC:3.4.25.1)
PROTEASOME_A_1 (db=PatternScan db_id=PS00388 from=7 to=29 evalue=0.0 interpro_id=IPR000426 interpro_description=Proteasome, alpha-subunit, conserved site GO=Molecular Function: endopeptidase activity (GO:0004175), Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511), Cellular Component: proteasome core complex, alpha-subunit complex (GO:0019773))
PROTEASOME SUBUNIT ALPHA/BETA (db=HMMPanther db_id=PTHR11599 from=8 to=228 evalue=5.6e-72)
S4JAR1_26_23

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17413..18096
DNA (684bp) protein (228aa)
Shwachman-Bodian-Diamond syndrome protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHZ9_9EURY (db=UNIREF evalue=4.0e-99 bit_score=363.0 identity=75.56 coverage=98.2456140350877)
ribosome maturation protein SBDS-like protein
RNA_SBDS: rRNA metabolism protein, SBDS fami (db=HMMTigr db_id=TIGR00291 from=1 to=227 evalue=2.8e-64 interpro_id=IPR002140 interpro_description=Ribosome maturation protein SBDS)
SHWACHMAN-BODIAN-DIAMOND SYNDROME PROTEIN (db=HMMPanther db_id=PTHR10927 from=1 to=226 evalue=8.5e-45 interpro_id=IPR002140 interpro_description=Ribosome maturation protein SBDS)
S4JAR1_26_24

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18103..18711
DNA (609bp) protein (203aa)
KH type 1 domain protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI00_9EURY (db=UNIREF evalue=1.0e-33 bit_score=146.0 identity=45.73 coverage=96.551724137931)
RNA-binding protein Rrp4 (containing S1 domain and KH domain)
seg (db=Seg db_id=seg from=155 to=170)
Eukaryotic type KH-domain (KH-domain type I) (db=superfamily db_id=SSF54791 from=111 to=183 evalue=4.5e-06)
Displaying 24 items

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