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gwa2_scaffold_412_16

Organism: zPERA2_38_36

near complete RP 47 / 55 MC: 8 BSCG 46 / 51 ASCG 8 / 38
Location: comp(13947..15323)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 Tax=zPERA2_38_36 UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 458.0
  • Bit_score: 911
  • Evalue 6.20e-262
seg (db=Seg db_id=seg from=223 to=241) iprscan interpro
DB: Seg
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 0
  • Evalue 0.0
(db=HMMPfam db_id=PF04542 from=84 to=140 evalue=1.5e-05 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
  • Identity: 0.0
  • Coverage: 0.0
  • Bit_score: 0
  • Evalue 1.00e+00

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Taxonomy

zPERA2_38_36 → Peregrinibacteria → Bacteria

Sequences

DNA sequence
Length: 1377
ATGATAACGGATAGCCTTATAGAATTAGGAATATACGGAGATGAGGGCGATGCTGAAGCAAGCAAGCCTGAATATGACGCCGGAGCAGGAGGGAATCTAATGGACGTGCTTGGTGGAAACGTAGATTTGATACGTTTTTCAAGGACGGCGCTCAAACAGGCTTATATTAAGCCCGTCATAAGCGATGTTGAAACTAGAGGCCTGATTATTTTGGCACAAAGTGGAGATATGGATGCCGCTCAGGAAGTAGTTGAGCGAAATTTAAGATTTATAATCAGTCGAGCGGTTTCTTGGTCAGGTCAAAAGAGCAAGCAAGAGATGGTTATGGATTTGATACAAGATGGTGTTTTGGTTGCATATAGATGCGTCAAGGGGTTTGATCATCGTTCGGATTGTACCTTTTTAACATACCTCAGAGGGGCATTAAATAATTTTTATAGCGCTAGGTTGCGTGCATATGTATTAAAGCATGGATATAGAGATTCAAGTTATGGATCAAATAGAATTAGAGAGTTGAAAACTGCGCCTGGTTATGCGGAAGTTGCCGGTGATAGACAGGTGAATGAACTGCAACCTGAGGAGATAGAGATGCTTTTGAAATGTTTAAAAGAAACGGCATATAAGGTAAAAACAGTCATAACTTCACGCACAGTATCTATGGAAGCCGGAGGTAGCGATAATGACGATGATGGCGGGTCGTTGGGCGATATGATGTCAGATGGGCATGCTGAAAGTCCGGAAAGCGTCGCTGTAAAAAGAGAAAGAAAGAGATTGTTGATGAATGCAATTAGCGGGCTTGGTGAAAGAGATCAGCTTATAGTGTCTTTAAAATTTAATTTAAACAGCGGCGAGTGTGGGGATCCGGTTAAACTTTGTAGATTGAGTAGGAATGCGGATCTAATGGAAAATATGGTTCAATCCGTAAGTGGATTTATGGAAGTTTTGAAAGGTTTGTGTGAAGAGTTTAAGCCAAGAGCAAATGGGGTTACAACAATGAAGCGTCAAAAAATAGTTGAACTTCAGGCGATGATAATGGAAAGCGAAGATAATCCGGAGGCAGTCGTTAAGGGTGAAAATATTTTTGGCCGCATGTTGCGATTTAAAATGGACGATTGCGCGGAGACGCTTTGCGTAATGGCGATGAATAGGATGACGGAATTTGATAGAGTCGTATTGAGTCAAATTTTTGCAATTCCAAACGGTGAAGATTATCAAATGCAGGCGATGTGCGATTTTTTAGGGATAACAAGGGAGAGAGTAAATCAAATATGGCACAGGCGAATTCAGCCGTATATTAAAAGTGCATTCATGGATAAAGATTACGATGGGTATGATAGAAAAGATCGAGATGTTGATCAGGAAGAATATTTATATTAA
PROTEIN sequence
Length: 459
MITDSLIELGIYGDEGDAEASKPEYDAGAGGNLMDVLGGNVDLIRFSRTALKQAYIKPVISDVETRGLIILAQSGDMDAAQEVVERNLRFIISRAVSWSGQKSKQEMVMDLIQDGVLVAYRCVKGFDHRSDCTFLTYLRGALNNFYSARLRAYVLKHGYRDSSYGSNRIRELKTAPGYAEVAGDRQVNELQPEEIEMLLKCLKETAYKVKTVITSRTVSMEAGGSDNDDDGGSLGDMMSDGHAESPESVAVKRERKRLLMNAISGLGERDQLIVSLKFNLNSGECGDPVKLCRLSRNADLMENMVQSVSGFMEVLKGLCEEFKPRANGVTTMKRQKIVELQAMIMESEDNPEAVVKGENIFGRMLRFKMDDCAETLCVMAMNRMTEFDRVVLSQIFAIPNGEDYQMQAMCDFLGITRERVNQIWHRRIQPYIKSAFMDKDYDGYDRKDRDVDQEEYLY*