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gwa2_scaffold_412

Alias: zPERA2_38_36_6

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Displaying items 1-30 of 108 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwa2_scaffold_412_1
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

1..300
DNA (300bp) protein (100aa)
Tax=zPERA2_38_36
gwa2_scaffold_412_2
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(316..1017)
DNA (702bp) protein (234aa)
Ribosomal RNA small subunit methyltransferase I n=6 Tax=Fusobacterium RepID=E5BI69_9FUSO
16S rRNA methyltransferase {ECO:0000313|EMBL:KKR06551.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
TIGR00096: putative S-adenosylmethionine-d (db=HMMTigr db_id=TIGR00096 from=4 to=233 evalue=1.3e-39 interpro_id=IPR008189 interpro_description=rRNA small subunit methyltransferase I GO=Molecular Function: methyltransferase activity (GO:0008168))
gwa2_scaffold_412_3
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(1029..1367)
DNA (339bp) protein (113aa)
Universal bacterial protein YeaZ n=2 Tax=Turicibacter RepID=D4W2A8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKR06552.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
coiled-coil (db=Coil db_id=coil from=43 to=64 evalue=NA)
gwa2_scaffold_412_4
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(1448..4180)
DNA (2733bp) protein (911aa)
N-acetylmuramoyl-L-alanine amidase family 2 n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C735_SPHTD
N-acetylmuramoyl-L-alanine amidase family 2 Tax=zPERA2_38_36
N-acetylmuramoyl-L-alanine amidase family 2 protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
gwa2_scaffold_412_5
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

4312..5595
DNA (1284bp) protein (428aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR06554.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
seg (db=Seg db_id=seg from=28 to=39)
gwa2_scaffold_412_6
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

5676..5993
DNA (318bp) protein (106aa)
LPBCA THIOREDOXIN n=1 Tax=synthetic construct RepID=UPI0002638C92
Lpbca thioredoxin {ECO:0000313|EMBL:KKQ71415.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
thioredoxin
THIOREDOXIN_1 (db=PatternScan db_id=PS00194 from=23 to=41 evalue=0.0 interpro_id=IPR017937 interpro_description=Thioredoxin, conserved site GO=Biological Process: cell redox homeostasis (GO:0045454))
gwa2_scaffold_412_7
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(6018..6491)
DNA (474bp) protein (158aa)
ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRL2_9PROT
Ribonuclease H Tax=zPERA2_38_36
coiled-coil (db=Coil db_id=coil from=112 to=133 evalue=NA)
gwa2_scaffold_412_8
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(6689..7267)
DNA (579bp) protein (193aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR06557.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
gwa2_scaffold_412_9
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

7380..7667
DNA (288bp) protein (96aa)
TrpR like protein, YerC/YecD n=1 Tax=Thermincola potens JR RepID=D5XD51_THEPJ
TrpR like protein, YerC/YecD {ECO:0000313|EMBL:KKQ71418.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
TrpR-like protein YerC/YecD
(db=HMMPfam db_id=PF01371 from=12 to=94 evalue=4.1e-24 interpro_id=IPR000831 interpro_description=Trp repressor GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
gwa2_scaffold_412_10
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

7755..8759
DNA (1005bp) protein (335aa)
Radical SAM domain protein n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KCL6_CYAP7
Radical SAM domain protein Tax=zPERA2_38_36
radical SAM protein
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=32 to=326 evalue=1.3e-41)
gwa2_scaffold_412_11
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

8776..9618
DNA (843bp) protein (281aa)
seg Tax=zPERA2_38_36
seg (db=Seg db_id=seg from=102 to=115)
gwa2_scaffold_412_12
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(9607..10944)
DNA (1338bp) protein (446aa)
Argininosuccinate lyase, argininosuccinate lyase {ECO:0000313|EMBL:KKR06561.1}; EC=4.3.2.1 {ECO:0000313|EMBL:KKR06561.1};; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacter
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CE80_THET1 rbh
FUMARATE_LYASES (db=PatternScan db_id=PS00163 from=290 to=299 evalue=0.0 interpro_id=IPR020557 interpro_description=Fumarate lyase, conserved site GO=Molecular Function: catalytic activity (GO:0003824))
gwa2_scaffold_412_13
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(10975..11982)
DNA (1008bp) protein (336aa)
MGS domain protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XKE0_HIRBI
Uncharacterized protein {ECO:0000313|EMBL:KKR06562.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=20 to=333 evalue=1.8e-48)
gwa2_scaffold_412_14
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(12036..12911)
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Desulfotomaculum ruminis DSM 2154 RepID=F6DLN1_DESRL
Uncharacterized protein {ECO:0000313|EMBL:KKR06563.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
gwa2_scaffold_412_15
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

12942..13955
DNA (1014bp) protein (338aa)
tRNA-dihydrouridine synthase n=1 Tax=Aerococcus viridans ATCC 11563 RepID=D4YI35_9LACT
tRNA-dihydrouridine synthase {ECO:0000313|EMBL:KKQ71424.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
dihydrouridine synthase DuS
seg (db=Seg db_id=seg from=124 to=137)
gwa2_scaffold_412_16
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(13947..15323)
DNA (1377bp) protein (459aa)
RNA polymerase sigma-70 Tax=zPERA2_38_36
seg (db=Seg db_id=seg from=223 to=241)
(db=HMMPfam db_id=PF04542 from=84 to=140 evalue=1.5e-05 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=224 to=284 evalue=1.1e-06 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct
gwa2_scaffold_412_17
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(15348..17060)
DNA (1713bp) protein (571aa)
RNA polymerase, sigma 70 subunit, RpoD subfamily protein n=1 Tax=Alteromonas sp. S89 RepID=UPI000255B9B5
RNA polymerase, sigma 70 subunit, RpoD subfamily protein Tax=zPERA2_38_36
seg (db=Seg db_id=seg from=168 to=186)
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=271 to=284 evalue=1.2e-05 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
gwa2_scaffold_412_18
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(17174..17587)
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis DSM 1100 RepID=F4KVB1_HALH1
Uncharacterized protein {ECO:0000313|EMBL:KKR06567.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
gwa2_scaffold_412_19
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(17630..18172)
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Meiothermus silvanus DSM 9946 RepID=D7BBP8_MEISD
Putative uncharacterized protein Tax=zPERA2_38_36
hypothetical protein
(db=HMMPfam db_id=PF01936 from=6 to=166 evalue=2.3e-26 interpro_id=IPR021139 interpro_description=NYN domain, limkain-b1-type)
gwa2_scaffold_412_20
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(18346..18744)
DNA (399bp) protein (133aa)
Tax=zPERA2_38_36
gwa2_scaffold_412_21
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(18759..18944)
DNA (186bp) protein (62aa)
Prophage antirepressor n=2 Tax=Geobacter metallireducens RepID=H1L8K0_GEOME
Prophage antirepressor Tax=zPERA2_38_36
phage antirepressor protein
seg (db=Seg db_id=seg from=25 to=36)
gwa2_scaffold_412_22
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(19229..19573)
DNA (345bp) protein (115aa)
coiled-coil Tax=zPERA2_38_36
hypothetical protein
coiled-coil (db=Coil db_id=coil from=6 to=34 evalue=NA)
gwa2_scaffold_412_23
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(19563..20285)
DNA (723bp) protein (241aa)
Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJ29_9BACT
Helix-turN-helix domain protein {ECO:0000313|EMBL:KKR06572.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
helix-turn-helix domain-containing protein
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=55 evalue=1.7e-10 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
gwa2_scaffold_412_24
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(20458..20859)
DNA (402bp) protein (134aa)
Tax=zPERA2_38_36
gwa2_scaffold_412_25
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(20819..21511)
DNA (693bp) protein (231aa)
Helix-turn-helix domain protein n=1 Tax=Paludibacter propionicigenes WB4 RepID=E4T8M4_PALPW
Helix-turN-helix domain protein {ECO:0000313|EMBL:KKR06574.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
repressor protein
(db=HMMPfam db_id=PF01381 from=6 to=57 evalue=1.1e-15 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
gwa2_scaffold_412_26
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(21655..22644)
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q458_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:KKQ71435.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
hypothetical protein
seg (db=Seg db_id=seg from=229 to=240)
gwa2_scaffold_412_27
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(23036..23539)
DNA (504bp) protein (168aa)
GCN5-related N-acetyltransferase (GNAT) domain Tax=zPERA2_38_36
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=48 to=152 evalue=0.00079 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=13 to=152 evalue=1.2e-09 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
(db=HMMPfam db_id=PF00583 from=55 to=148 evalue=5.4e-05 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
gwa2_scaffold_412_28
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(23529..23717)
DNA (189bp) protein (63aa)
Tax=zPERA2_38_36
gwa2_scaffold_412_29
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(23803..24534)
DNA (732bp) protein (244aa)
Putative uncharacterized protein n=1 Tax=uncultured marine bacterium 580 RepID=Q6SFL1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKR06578.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
gwa2_scaffold_412_30
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(24545..25966)
DNA (1422bp) protein (474aa)
Putative uncharacterized protein n=3 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSH1_9BACT
Putative uncharacterized protein Tax=zPERA2_38_36
hypothetical protein
seg (db=Seg db_id=seg from=411 to=422)
Displaying items 1-30 of 108 in total

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