ggKbase home page

gwa2_scaffold_412_17 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase, sigma 70 subunit, RpoD subfamily protein n=1 Tax=Alteromonas sp. S89 RepID=UPI000255B9B5 similarity UNIREF
DB: UNIREF90
28.0 0.0 79 2.00e+00
RNA polymerase, sigma 70 subunit, RpoD subfamily protein Tax=zPERA2_38_36 UNIPROT
DB: UniProtKB
100.0 570.0 1139 0.0 ggdbv1_1379842
seg (db=Seg db_id=seg from=168 to=186) iprscan interpro
DB: Seg
0.0 0.0 0 0.0
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=271 to=284 evalue=1.2e-05 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
0.0 0.0 0 1.00e+00
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=222 to=315 evalue=1.2e-14) iprscan interpro
DB: Gene3D
0.0 0.0 0 1.00e+00
(db=HMMPfam db_id=PF04542 from=245 to=314 evalue=2.3e-08 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 2.00e+00
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=240 to=502 evalue=3.2e-05 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016 iprscan interpro
DB: HMMTigr
0.0 0.0 0 3.00e+00
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=222 to=313 evalue=4.6e-18 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fac iprscan interpro
DB: superfamily
0.0 0.0 0 4.00e+00