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GWC2_NC10X_70_16_gwc2_scaffold_3401

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_NC10X_70_16_gwc2_scaffold_3401_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(1..576)
DNA (576bp) protein (192aa)
Putative HTH-type transcriptional repressor allR id=4359030 bin=GWC2_Methylomirabilis_70_16 species=Blastococcus saxobsidens genus=Blastococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative HTH-type transcriptional repressor allR Tax=GWC2_Rokubacteria_70_16_curated
putative HTH-type transcriptional repressor allR
GWC2_NC10X_70_16_gwc2_scaffold_3401_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

808..1854
DNA (1047bp) protein (349aa)
TRAP-type C4-dicarboxylate transport system, periplasmic component id=4359031 bin=GWC2_Methylomirabilis_70_16 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
family 7 extracellular solute-binding protein Tax=GWC2_Rokubacteria_70_16_curated
family 7 extracellular solute-binding protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1910..2389
DNA (480bp) protein (160aa)
Possible TrapT family, dctQ subunit, C4-dicarboxylate transport id=4359032 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
TRAP dicarboxylate family transporter subunit DctQ Tax=GWC2_Rokubacteria_70_16_curated
TRAP dicarboxylate family transporter subunit DctQ
GWC2_NC10X_70_16_gwc2_scaffold_3401_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2396..3697
DNA (1302bp) protein (434aa)
Candidate large permease component id=4359033 bin=GWC2_Methylomirabilis_70_16 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dctQ; large permease Tax=GWC2_Rokubacteria_70_16_curated
dctQ; large permease
GWC2_NC10X_70_16_gwc2_scaffold_3401_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4115..5368)
DNA (1254bp) protein (418aa)
Arabinose efflux permease family protein id=4359034 bin=GWC2_Methylomirabilis_70_16 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
arabinose efflux permease family protein Tax=GWC2_Rokubacteria_70_16_curated
arabinose efflux permease family protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

5563..7398
DNA (1836bp) protein (612aa)
Extracellular HAF id=4359035 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
extracellular HAF Tax=GWC2_Rokubacteria_70_16_curated
extracellular HAF
GWC2_NC10X_70_16_gwc2_scaffold_3401_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7408..7710)
DNA (303bp) protein (101aa)
id=4359036 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=4359036 Tax=GWC2_Rokubacteria_70_16_curated
GWC2_NC10X_70_16_gwc2_scaffold_3401_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7872..8135
DNA (264bp) protein (88aa)
Putative uncharacterized protein id=4359037 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(8206..8952)
DNA (747bp) protein (249aa)
Putative uncharacterized protein id=4359038 bin=GWC2_Methylomirabilis_70_16 species=Ralstonia solanacearum genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(9044..10114)
DNA (1071bp) protein (357aa)
Putative uncharacterized protein id=4359039 bin=GWC2_Methylomirabilis_70_16 species=Massilia timonae genus=Massilia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RSp0266; hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
RSp0266; hypothetical protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

11043..12611
DNA (1569bp) protein (523aa)
hsdM; type I restriction-modification system DNA methylase (EC:2.1.1.72); K03427 type I restriction enzyme M protein [EC:2.1.1.72] Tax=GWC2_Rokubacteria_70_16_curated
hsdM; type I restriction-modification system DNA methylase (EC:2.1.1.72)
Type I restriction-modification system DNA methylase id=4359040 bin=GWC2_Methylomirabilis_70_16 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GWC2_NC10X_70_16_gwc2_scaffold_3401_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

12601..13842
DNA (1242bp) protein (414aa)
putative restriction modification system DNA specificity domain; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3] Tax=GWC2_Rokubacteria_70_16_curated
Putative restriction modification system DNA specificity domain id=4359041 bin=GWC2_Methylomirabilis_70_16 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
restriction modification system DNA specificity domain
GWC2_NC10X_70_16_gwc2_scaffold_3401_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

13857..14117
DNA (261bp) protein (87aa)
Putative uncharacterized protein id=4359042 bin=GWC2_Methylomirabilis_70_16 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

14127..14414
DNA (288bp) protein (96aa)
Putative uncharacterized protein id=4359099 bin=GWC2_Methylomirabilis_70_16 species=Magnetospirillum magneticum genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

14437..17580
DNA (3144bp) protein (1048aa)
type I restriction endonuclease, HsdR family; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] Tax=GWC2_Rokubacteria_70_16_curated
Type I restriction endonuclease, HsdR family id=4359100 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type I restriction endonuclease, HsdR family
GWC2_NC10X_70_16_gwc2_scaffold_3401_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(17842..18213)
DNA (372bp) protein (124aa)
growth inhibitor protein Tax=GWC2_Rokubacteria_70_16_curated
growth inhibitor protein id=4871516 bin=GWC2_Methylomirabilis_70_24 species=Anabaena sp. 90 genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
growth inhibitor protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18192..18437)
DNA (246bp) protein (82aa)
Uncharacterized protein id=4359101 bin=GWC2_Methylomirabilis_70_16 species=Cylindrospermum stagnale genus=Cylindrospermum taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists


comp(18532..19095)
DNA (564bp) protein (188aa)
Non-canonical purine NTP pyrophosphatase id=4359102 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family Tax=GWC2_Rokubacteria_70_16_curated
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
GWC2_NC10X_70_16_gwc2_scaffold_3401_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19142..19891)
DNA (750bp) protein (250aa)
ribonuclease PH; K00989 ribonuclease PH [EC:2.7.7.56] Tax=GWC2_Rokubacteria_70_16_curated
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH id=4359103 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GWC2_NC10X_70_16_gwc2_scaffold_3401_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19888..21417)
DNA (1530bp) protein (510aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28) Tax=GWC2_Rokubacteria_70_16_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Putative N-acetylmuramoyl-L-alanine amidase id=4359104 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GWC2_NC10X_70_16_gwc2_scaffold_3401_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(21494..22645)
DNA (1152bp) protein (384aa)
Thiolase, N-terminal domain protein id=4359105 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
beta-ketoacyl synthase Tax=GWC2_Rokubacteria_70_16_curated
beta-ketoacyl synthase
GWC2_NC10X_70_16_gwc2_scaffold_3401_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(22642..23079)
DNA (438bp) protein (146aa)
hypothetical protein AATC3_04902 id=4359106 bin=GWC2_Methylomirabilis_70_16 species=Sinorhizobium meliloti genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K07068 Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(23082..23825)
DNA (744bp) protein (248aa)
fabG; 3-oxoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=GWC2_Rokubacteria_70_16_curated
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier protein) reductase id=4359108 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
GWC2_NC10X_70_16_gwc2_scaffold_3401_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(24022..25554)
DNA (1533bp) protein (511aa)
acyl-CoA synthetase id=4359111 bin=GWC2_Methylomirabilis_70_16 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II Tax=GWC2_Rokubacteria_70_16_curated
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
GWC2_NC10X_70_16_gwc2_scaffold_3401_25
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(25567..26280)
DNA (714bp) protein (238aa)
amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWC2_Rokubacteria_70_16_curated
High-affinity branched-chain amino acid transport ATP-binding protein livF (LIV-I protein F) id=4359113 bin=GWC2_Methylomirabilis_70_16 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amino acid ABC transporter ATP-binding protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_26
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(26273..27040)
DNA (768bp) protein (256aa)
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family id=4359115 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWC2_Rokubacteria_70_16_curated
ABC transporter-like protein
GWC2_NC10X_70_16_gwc2_scaffold_3401_27
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(27037..27996)
DNA (960bp) protein (320aa)
Inner-membrane translocator id=4359117 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWC2_Rokubacteria_70_16_curated
livM; branched-chain amino acid ABC transporter membrane protein
Displaying 27 items

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