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gwc2_scaffold_350

Alias: GWC2_PER_33_13_8

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Displaying items 1-30 of 92 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_PER_33_13_8_1
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(147..530)
DNA (384bp) protein (128aa)
50S ribosomal protein L21 n=1 Tax=Lacinutrix sp. (strain 5H-3-7-4) RepID=F6GHI6_LACS5
50S ribosomal protein L21 {ECO:0000313|EMBL:KKP37949.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
50S ribosomal protein L21
seg (db=Seg db_id=seg from=106 to=127)
GWC2_PER_33_13_8_2
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(633..1181)
DNA (549bp) protein (183aa)
Peptidyl-tRNA hydrolase n=1 Tax=Clostridium sp. L2-50 RepID=A7VI90_9CLOT
pth; peptidyl-tRNA hydrolase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
pth; peptidyl-tRNA hydrolase
PEPT_TRNA_HYDROL_2 (db=PatternScan db_id=PS01196 from=109 to=119 evalue=0.0 interpro_id=IPR018171 interpro_description=Peptidyl-tRNA hydrolase, conserved site GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045))
GWC2_PER_33_13_8_3
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(1191..2507)
DNA (1317bp) protein (439aa)
GTPase obg n=1 Tax=Acetonema longum DSM 6540 RepID=F7NHR0_9FIRM rbh
GTPase obg {ECO:0000313|EMBL:KKP37951.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
GTPase obg
GTP1_OBG (db=PatternScan db_id=PS00905 from=217 to=230 evalue=0.0 interpro_id=IPR006074 interpro_description=GTP1/OBG, conserved site GO=Molecular Function: GTP binding (GO:0005525))
GWC2_PER_33_13_8_4
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(2597..3280)
DNA (684bp) protein (228aa)
Undecaprenyl diphosphate synthase, undecaprenyl diphosphate synthase {ECO:0000313|EMBL:KKP39735.1}; EC=2.5.1.31 {ECO:0000313|EMBL:KKP39735.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" so
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase n=2 Tax=Coprococcus RepID=D5HFZ6_9FIRM
seg (db=Seg db_id=seg from=141 to=154)
GWC2_PER_33_13_8_5
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(3610..4065)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PLQ8_9CYAN
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
TIGR00149_YbjQ: secondary thiamine-pho (db=HMMTigr db_id=TIGR00149 from=6 to=151 evalue=1.3e-27 interpro_id=IPR001602 interpro_description=Uncharacterised protein family UPF0047)
GWC2_PER_33_13_8_6
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

4599..5117
DNA (519bp) protein (173aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
coiled-coil (db=Coil db_id=coil from=102 to=130 evalue=NA)
seg (db=Seg db_id=seg from=134 to=148)
GWC2_PER_33_13_8_7
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(5178..7355)
DNA (2178bp) protein (726aa)
UvrABC system protein C n=6 Tax=Clostridium thermocellum RepID=UVRC_CLOTH rbh
Excinuclease ABC subunit C, excinuclease ABC subunit C {ECO:0000313|EMBL:KKP39738.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
uvrC; excinuclease ABC subunit C
seg (db=Seg db_id=seg from=494 to=505)
GWC2_PER_33_13_8_8
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(7413..8330)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0ANB3_IGNAJ
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=111)
GWC2_PER_33_13_8_9
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(8388..9539)
DNA (1152bp) protein (384aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP37957.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=133 to=144)
GWC2_PER_33_13_8_10
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

9594..9836
DNA (243bp) protein (81aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
GWC2_PER_33_13_8_11
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(9859..11178)
DNA (1320bp) protein (440aa)
GTPase Der n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CL36_DESK7 rbh
GTP-binding protein engA; K03977 GTP-binding protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GTP-binding protein engA
no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=348 to=437 evalue=1.1e-18 interpro_id=IPR015946 interpro_description=K homology domain-like, alpha/beta)
GWC2_PER_33_13_8_12
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

11282..11941
DNA (660bp) protein (220aa)
Alanine racemase domain protein n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E316_DICTD
Alanine racemase domain protein {ECO:0000313|EMBL:KKP37961.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
alanine racemase domain-containing protein
seg (db=Seg db_id=seg from=57 to=68)
GWC2_PER_33_13_8_13
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

12007..13233
DNA (1227bp) protein (409aa)
Putative uncharacterized protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GKI6_9FIRM
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
GWC2_PER_33_13_8_14
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(13234..14379)
DNA (1146bp) protein (382aa)
Glycosyl transferase group 1 n=1 Tax=Methanotorris formicicus Mc-S-70 RepID=H1L0E6_9EURY
group 1 glycosyl transferase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
group 1 glycosyl transferase
coiled-coil (db=Coil db_id=coil from=217 to=238 evalue=NA)
GWC2_PER_33_13_8_15
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14404..15573)
DNA (1170bp) protein (390aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=52 to=66)
GWC2_PER_33_13_8_16
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(15596..16711)
DNA (1116bp) protein (372aa)
Glycosyl transferase group 1 n=2 Tax=Thermoanaerobacter RepID=D7ATW0_THEM3 rbh
group 1 glycosyl transferase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
group 1 glycosyl transferase
(db=HMMPfam db_id=PF00534 from=190 to=340 evalue=1.4e-29 interpro_id=IPR001296 interpro_description=Glycosyl transferase, family 1 GO=Biological Process: biosynthetic process (GO:0009058))
GWC2_PER_33_13_8_17
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(16805..17176)
DNA (372bp) protein (124aa)
Anti-sigma F factor antagonist n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EN33_CLOPA
anti-sigma F factor antagonist Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
spoIIAA; anti-sigma F factor antagonist
SULFATE TRANSPORTER (db=HMMPanther db_id=PTHR11814:SF6 from=2 to=116 evalue=0.00029)
GWC2_PER_33_13_8_18
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(17196..17762)
DNA (567bp) protein (189aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP39749.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
no description (db=Gene3D db_id=G3DSA:3.30.565.10 from=22 to=171 evalue=1.0e-08 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (db=superfamily db_id=SSF55874 from=52 to=163 evalue=4.4e-10 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
(db=HMMPfam db_id=PF02518 from=56 to=135 evalue=5.5e-06 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
GWC2_PER_33_13_8_19
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

17879..19075
DNA (1197bp) protein (399aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
coiled-coil (db=Coil db_id=coil from=345 to=366 evalue=NA)
GWC2_PER_33_13_8_20
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(19082..19366)
DNA (285bp) protein (95aa)
P-protein (EC:5.4.99.5 4.2.1.51); K14170 chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
Chorismate mutase/prephenate dehydratase n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DC24_9PROT
no description (db=HMMSmart db_id=SM00830 from=9 to=89 evalue=2.8e-18 interpro_id=IPR002701 interpro_description=Chorismate mutase GO=Biological Process: chorismate metabolic process (GO:0046417))
GWC2_PER_33_13_8_21
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists


19495..20175
DNA (681bp) protein (227aa)
30S ribosomal protein S2 n=1 Tax=Nitratiruptor sp. (strain SB155-2) RepID=RS2_NITSB
30S ribosomal protein S2, small subunit ribosomal protein S2 {ECO:0000313|EMBL:KKP39752.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.
rpsB; 30S ribosomal protein S2
RIBOSOMAL_S2_2 (db=PatternScan db_id=PS00963 from=159 to=183 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_PER_33_13_8_22
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

20207..20710
DNA (504bp) protein (168aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
seg (db=Seg db_id=seg from=61 to=80)
GWC2_PER_33_13_8_23
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

20750..21337
DNA (588bp) protein (196aa)
Elongation factor Ts n=2 Tax=Dictyoglomus RepID=EFTS_DICT6
tsf; elongation factor Ts; K02357 elongation factor Ts Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
tsf; elongation factor Ts
EF_TS_1 (db=PatternScan db_id=PS01126 from=11 to=26 evalue=0.0 interpro_id=IPR018101 interpro_description=Translation elongation factor Ts, conserved site GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
GWC2_PER_33_13_8_24
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

21408..22616
DNA (1209bp) protein (403aa)
Riboflavin biosynthesis protein RibBA n=3 Tax=Leptospirillum RepID=J9ZBH0_LEPFM rbh
3,4-dihydroxy-2-butanone 4-phosphate synthase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
3,4-dihydroxy-2-butanone 4-phosphate synthase
seg (db=Seg db_id=seg from=20 to=33)
GWC2_PER_33_13_8_25
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

22617..23705
DNA (1089bp) protein (363aa)
5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:3.5.4.26 1.1.1.193)
Riboflavin biosynthesis protein RibD n=6 Tax=Clostridium thermocellum RepID=E6UMT7_CLOTL rbh
Riboflavin biosynthesis protein RibD {ECO:0000313|EMBL:KKP37974.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=49 to=90 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
GWC2_PER_33_13_8_26
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(23685..23903)
DNA (219bp) protein (73aa)
id=5091242 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_8_27
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

24047..25528
DNA (1482bp) protein (494aa)
Peptidase, M23/M37 family n=1 Tax=Peptoniphilus sp. oral taxon 386 str. F0131 RepID=D7N6I3_9FIRM
Peptidase, M23/M37 family {ECO:0000313|EMBL:KKP37976.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
lipoprotein
coiled-coil (db=Coil db_id=coil from=74 to=102 evalue=NA)
GWC2_PER_33_13_8_28
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

25661..26116
DNA (456bp) protein (152aa)
id=5091244 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_8_29
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(26188..29007)
DNA (2820bp) protein (940aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
coiled-coil (db=Coil db_id=coil from=160 to=188 evalue=NA)
seg (db=Seg db_id=seg from=34 to=52)
GWC2_PER_33_13_8_30
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(29122..29943)
DNA (822bp) protein (274aa)
Glycosyl transferase family 2 n=1 Tax=Cyanothece sp. (strain PCC 7822) RepID=E0U834_CYAP2
family 2 glycosyl transferase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
family 2 glycosyl transferase
seg (db=Seg db_id=seg from=252 to=263)
Displaying items 1-30 of 92 in total

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