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gwc2_scaffold_835

Alias: GWC2_PER_33_13_13

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Displaying items 1-30 of 41 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_PER_33_13_13_1
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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115..393
DNA (279bp) protein (93aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP37166.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
GWC2_PER_33_13_13_2
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(397..1719)
DNA (1323bp) protein (441aa)
DNA polymerase IV n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LSC9_SYNAS rbh
Polymerase IV protein {ECO:0000313|EMBL:KKP37167.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
nucleotidyltransferase/DNA polymerase protein
DNA POLYMERASE IV / KAPPA (db=HMMPanther db_id=PTHR11076:SF12 from=19 to=392 evalue=1.7e-67)
GWC2_PER_33_13_13_3
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(1731..2297)
DNA (567bp) protein (189aa)
LexA repressor n=1 Tax=uncultured bacterium W4-21b RepID=H9BWP7_9BACT
LexA repressor {ECO:0000313|EMBL:KKP37168.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
repressor
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=71 to=186 evalue=1.8e-32 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
GWC2_PER_33_13_13_4
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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2412..3077
DNA (666bp) protein (222aa)
Putative uncharacterized protein n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8DZF6_DICTD
Uncharacterized protein {ECO:0000313|EMBL:KKP38980.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
seg (db=Seg db_id=seg from=188 to=201)
GWC2_PER_33_13_13_5
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(3082..3993)
DNA (912bp) protein (304aa)
PAS domain S-box n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C9B2_DESTA
PAS domain S-box {ECO:0000313|EMBL:KKP37170.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
PAS domain S-box
seg (db=Seg db_id=seg from=7 to=18)
GWC2_PER_33_13_13_6
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(3990..4886)
DNA (897bp) protein (299aa)
spoT; SpoT guanosine polyphosphate pyrophosphohydrolase (EC:3.1.7.2)
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Neisseria shayeganii 871 RepID=G4CFG9_9NEIS
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase {ECO:0000313|EMBL:KKP37171.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE (db=HMMPanther db_id=PTHR21262 from=60 to=293 evalue=1.0e-21 interpro_id=IPR004811 interpro_description=RelA/SpoT protein GO=Biological Process: guanosine tetraphosphate metabolic process (GO:0015969))
GWC2_PER_33_13_13_7
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(4974..5882)
DNA (909bp) protein (303aa)
Tryptophan synthase alpha chain n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z3D6_DESAT
Tryptophan synthase alpha chain {ECO:0000313|EMBL:KKP37172.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
tryptophan synthase subunit slpha
seg (db=Seg db_id=seg from=239 to=246)
GWC2_PER_33_13_13_8
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(5901..7121)
DNA (1221bp) protein (407aa)
trpB; tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YJI9_THEYD rbh
Tryptophan synthase beta chain {ECO:0000313|EMBL:KKP37173.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
seg (db=Seg db_id=seg from=20 to=33)
GWC2_PER_33_13_13_9
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(7125..9428)
DNA (2304bp) protein (768aa)
Anthranilate phosphoribosyltransferase, anthranilate synthase/phosphoribosyltransferase {ECO:0000313|EMBL:KKP38985.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KKP38985.1};; TaxID=1619061 species="Bacteria; Pere
Anthranilate phosphoribosyltransferase n=1 Tax=Bacillus smithii 7_3_47FAA RepID=G9QQQ9_9BACI rbh
trpD; anthranilate phosphoribosyltransferase
coiled-coil (db=Coil db_id=coil from=296 to=317 evalue=NA)
GWC2_PER_33_13_13_10
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(9448..10935)
DNA (1488bp) protein (496aa)
anthranilate synthase, component II, anthranilate synthase, component I (EC:4.1.3.27)
Glutamine amidotransferase of anthranilate synthase n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YKS4_LYNSP rbh
Glutamine amidotransferase of anthranilate synthase {ECO:0000313|EMBL:KKP37175.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
coiled-coil (db=Coil db_id=coil from=200 to=228 evalue=NA)
GWC2_PER_33_13_13_11
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(11006..11305)
DNA (300bp) protein (100aa)
Anthranilate synthase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IU37_9GAMM
Anthranilate synthase {ECO:0000313|EMBL:KKP37176.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
Trp operon repressor
coiled-coil (db=Coil db_id=coil from=35 to=56 evalue=NA)
GWC2_PER_33_13_13_12
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

11522..14758
DNA (3237bp) protein (1079aa)
Putative uncharacterized protein n=2 Tax=Paenibacillus RepID=F3M326_9BACL
S-layer protein {ECO:0000313|EMBL:KKP38988.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
seg (db=Seg db_id=seg from=9 to=19)
GWC2_PER_33_13_13_13
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

15036..15929
DNA (894bp) protein (298aa)
Putative S-layer protein n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J646_MARPK
putative S-layer protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
coiled-coil (db=Coil db_id=coil from=171 to=192 evalue=NA)
GWC2_PER_33_13_13_14
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

15999..17255
DNA (1257bp) protein (419aa)
glucan endo-1,3-beta-D-glucosidase (EC:3.2.1.39) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
S-layer domain-containing protein n=2 Tax=Pelosinus fermentans RepID=I8S9F5_9FIRM
S-layer domain-containing protein
seg (db=Seg db_id=seg from=388 to=401)
GWC2_PER_33_13_13_15
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17290..18441)
DNA (1152bp) protein (384aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=109 to=127)
GWC2_PER_33_13_13_16
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(18453..19925)
DNA (1473bp) protein (491aa)
chitinase, class II (EC:3.2.1.14); K01183 chitinase [EC:3.2.1.14] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
Chitinase A1 n=2 Tax=Bacillales RepID=CHIA1_BACCI
carbohydrate-binding protein
seg (db=Seg db_id=seg from=249 to=265)
GWC2_PER_33_13_13_17
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

20109..21389
DNA (1281bp) protein (427aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4K5_GEOUR rbh
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
PHP domain-like (db=superfamily db_id=SSF89550 from=1 to=263 evalue=1.7e-16 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
GWC2_PER_33_13_13_18
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

21437..23152
DNA (1716bp) protein (572aa)
ATP-dependent DNA helicase PcrA (EC:3.6.1.-); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
ATP-dependent DNA helicase PcrA n=2 Tax=Pediococcus pentosaceus RepID=Q03EG2_PEDPA
coiled-coil (db=Coil db_id=coil from=119 to=140 evalue=NA)
GWC2_PER_33_13_13_19
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

23182..24324
DNA (1143bp) protein (381aa)
Sodium/hydrogen exchanger n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0LB14_ZOBGA
sodium/hydrogen exchanger Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
sodium/hydrogen exchanger
seg (db=Seg db_id=seg from=146 to=159)
GWC2_PER_33_13_13_20
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(24352..25290)
DNA (939bp) protein (313aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
coiled-coil (db=Coil db_id=coil from=96 to=124 evalue=NA)
seg (db=Seg db_id=seg from=41 to=52)
NagB/RpiA/CoA transferase-like (db=superfamily db_id=SSF100950 from=1 to=295 evalue=3.0e-20)
GWC2_PER_33_13_13_21
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(25302..26618)
DNA (1317bp) protein (439aa)
Possible tyrosine transporter P-protein n=2 Tax=Desulfotomaculum RepID=A4J602_DESRM rbh
Putative tyrosine transporter P-protein {ECO:0000313|EMBL:KKP37187.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
citrate transporter
seg (db=Seg db_id=seg from=27 to=39)
GWC2_PER_33_13_13_22
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(26657..27907)
DNA (1251bp) protein (417aa)
Ribonuclease H (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LUU8_HIPMA rbh
Ribonuclease HII {ECO:0000313|EMBL:KKP37188.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
RIBONUCLEASE HII (db=HMMPanther db_id=PTHR10954 from=1 to=206 evalue=1.5e-27 interpro_id=IPR001352 interpro_description=Ribonuclease HII/HIII GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease H activity (GO:0004523))
GWC2_PER_33_13_13_23
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

28011..32009
DNA (3999bp) protein (1333aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=1 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=43)
Concanavalin A-like lectins/glucanases (db=superfamily db_id=SSF49899 from=136 to=322 evalue=8.0e-08 interpro_id=IPR008985 interpro_description=Concanavalin A-like lectin/glucanase)
GWC2_PER_33_13_13_24
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

32111..33796
DNA (1686bp) protein (562aa)
Histone acetyltransferase n=3 Tax=Methanosarcina RepID=Q8PVI9_METMA rbh
histone acetyltransferase, ELP3 family Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
histone acetyltransferase, ELP3 family
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=411 to=559 evalue=0.00072 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
GWC2_PER_33_13_13_25
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(33825..34742)
DNA (918bp) protein (306aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
NAD dependent epimerase/dehydratase n=1 Tax=Marssonina brunnea f. sp. multigermtubi (strain MB_m1) RepID=K1WVI9_MARBU
probable rhamnose biosynthetic enzyme 2-like Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=4 to=197 evalue=1.4e-22 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
GWC2_PER_33_13_13_26
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

34962..36128
DNA (1167bp) protein (389aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Bacteroidetes oral taxon 274 str. F0058 RepID=D7JFJ1_9BACT rbh
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase {ECO:0000313|EMBL:KKP37192.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
seg (db=Seg db_id=seg from=72 to=83)
GWC2_PER_33_13_13_27
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

36304..37260
DNA (957bp) protein (319aa)
tRNA-dihydrouridine synthase n=1 Tax=Pythium ultimum RepID=K3X2Z5_PYTUL
tRNA-dihydrouridine synthase {ECO:0000313|EMBL:KKP37193.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
dihydrouridine synthase dus
seg (db=Seg db_id=seg from=245 to=256)
GWC2_PER_33_13_13_28
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

37333..38004
DNA (672bp) protein (224aa)
Glycosyltransferases involved in cell wall biogenesis n=2 Tax=Caldanaerobacter subterraneus RepID=Q8RA31_THETN
Uncharacterized protein {ECO:0000313|EMBL:KKP37194.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
WcaA3; cell wall biosynthesis glycosyltransferase
seg (db=Seg db_id=seg from=209 to=223)
GWC2_PER_33_13_13_29
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

38067..39140
DNA (1074bp) protein (358aa)
Potassium efflux system KefA protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JQQ0_9BACT
Mechanosensitive ion channel protein MscS {ECO:0000313|EMBL:KKP39005.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
small-conductance mechanosensitive channel
seg (db=Seg db_id=seg from=25 to=53)
GWC2_PER_33_13_13_30
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

39201..39959
DNA (759bp) protein (253aa)
Probable transcriptional regulatory protein Hore_12350 n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=Y1235_HALOH
Transcriptional regulator {ECO:0000313|EMBL:KKP37196.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
hypothetical protein
(db=HMMPfam db_id=PF01709 from=5 to=239 evalue=1.5e-82 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
Displaying items 1-30 of 41 in total

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