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gwc2_scaffold_1423

Alias: GWC2_PER_33_13_16

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_PER_33_13_16_1
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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173..709
DNA (537bp) protein (179aa)
50S ribosomal protein L7/L12 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A2
50S ribosomal protein L7/L12 {ECO:0000313|EMBL:KKP38687.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
50S ribosomal protein L7/L12
coiled-coil (db=Coil db_id=coil from=7 to=28 evalue=NA)
GWC2_PER_33_13_16_2
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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739..1578
DNA (840bp) protein (280aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38688.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
seg (db=Seg db_id=seg from=102 to=113)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=120)
GWC2_PER_33_13_16_3
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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1609..2646
DNA (1038bp) protein (346aa)
Pilus retraction ATPase PilT n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ALE7_PELPD rbh
Twitching motility protein, twitching motility protein PilT {ECO:0000313|EMBL:KKP38689.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;
twitching motility protein
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=2 to=341 evalue=1.6e-74)
GWC2_PER_33_13_16_4
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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2882..3319
DNA (438bp) protein (146aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=8 to=15)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=100)
GWC2_PER_33_13_16_5
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

3309..3719
DNA (411bp) protein (137aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
GWC2_PER_33_13_16_6
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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3722..4141
DNA (420bp) protein (140aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=2 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
GWC2_PER_33_13_16_7
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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4144..4551
DNA (408bp) protein (136aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38693.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=38 to=51)
GWC2_PER_33_13_16_8
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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4565..5185
DNA (621bp) protein (207aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=6 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
GWC2_PER_33_13_16_9
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(5189..6700)
DNA (1512bp) protein (504aa)
Methionyl-tRNA synthetase, methionyl-tRNA synthetase {ECO:0000313|EMBL:KKP38695.1}; EC=6.1.1.10 {ECO:0000313|EMBL:KKP38695.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinib
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PAF5_DEFDS rbh
TRNASYNTHMET (db=FPrintScan db_id=PR01041 from=6 to=19 evalue=1.3e-30 interpro_id=IPR014758 interpro_description=Methionyl-tRNA synthetase GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: methionine-tRNA ligase activity (GO:0004825), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: methionyl-tRNA aminoacylation (GO:0006431))
GWC2_PER_33_13_16_10
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(6850..7959)
DNA (1110bp) protein (370aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=16 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
GWC2_PER_33_13_16_11
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(7971..8660)
DNA (690bp) protein (230aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
(db=HMMPfam db_id=PF07963 from=9 to=28 evalue=0.00012 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
Pili subunits (db=superfamily db_id=SSF54523 from=11 to=60 evalue=9.4e-10)
GWC2_PER_33_13_16_12
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(8726..9403)
DNA (678bp) protein (226aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=22 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=8 to=28 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
GWC2_PER_33_13_16_13
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(9423..10040)
DNA (618bp) protein (206aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=18 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
no description (db=Gene3D db_id=G3DSA:3.30.700.10 from=11 to=44 evalue=3.9e-06)
GWC2_PER_33_13_16_14
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(10075..11268)
DNA (1194bp) protein (398aa)
Type II secretion system F domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P2J2_9BACT
type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
pilus assembly protein PilC
seg (db=Seg db_id=seg from=370 to=388)
GWC2_PER_33_13_16_15
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(11293..11901)
DNA (609bp) protein (203aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38701.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
coiled-coil (db=Coil db_id=coil from=33 to=61 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(db=HMMPfam db_id=PF04350 from=35 to=137 evalue=7.7e-05)
GWC2_PER_33_13_16_16
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(11934..12527)
DNA (594bp) protein (198aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
coiled-coil (db=Coil db_id=coil from=44 to=72 evalue=NA)
seg (db=Seg db_id=seg from=179 to=193)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
GWC2_PER_33_13_16_17
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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12600..12926
DNA (327bp) protein (109aa)
Uncharacterized protein n=3 Tax=Alicyclobacillus acidocaldarius RepID=C8WXE1_ALIAD
Uncharacterized protein {ECO:0000313|EMBL:KKP36290.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
hypothetical protein
GWC2_PER_33_13_16_18
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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13027..14004
DNA (978bp) protein (326aa)
tRNA(Ile)-lysidine synthase n=10 Tax=Fusobacterium RepID=TILS_FUSNN
tRNA(Ile)-lysidine synthase {ECO:0000313|EMBL:KKP36291.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
tRNA(Ile)-lysidine synthase
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=4 to=185 evalue=1.7e-32 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
GWC2_PER_33_13_16_19
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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14051..15946
DNA (1896bp) protein (632aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3); K03798 cell division protease FtsH [EC:3.4.24.-] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH n=2 Tax=uncultured candidate division JS1 bacterium RepID=G3BMI9_9BACT rbh
coiled-coil (db=Coil db_id=coil from=576 to=604 evalue=NA)
GWC2_PER_33_13_16_20
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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15981..16505
DNA (525bp) protein (175aa)
Protein containing Heat shock protein Hsp20 domain n=1 Tax=sediment metagenome PF62_9ZZZZ">RepID=D9PF62_9ZZZZ
heat shock protein hsp20; K13993 HSP20 family protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
heat-shock protein Hsp20
seg (db=Seg db_id=seg from=157 to=174)
GWC2_PER_33_13_16_21
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

16510..17379
DNA (870bp) protein (290aa)
UTP-glucose-1-phosphate uridylyltransferase, UTP-glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:KKP38707.1}; EC=2.7.7.9 {ECO:0000313|EMBL:KKP38707.1};; TaxID=1619061 species="Bacteria; Pere
galU; glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
Glucose-1-phosphate uridylyltransferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK76_9BACT rbh
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=2 to=275 evalue=1.8e-60)
GWC2_PER_33_13_16_22
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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17552..18148
DNA (597bp) protein (199aa)
TPR-domain containing protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVR3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP38708.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
TETRATRICOPEPTIDE REPEAT PROTEIN, TPR (db=HMMPanther db_id=PTHR23083 from=1 to=197 evalue=1.6e-17)
GWC2_PER_33_13_16_23
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

18775..20076
DNA (1302bp) protein (434aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=218 to=229)
ARM repeat (db=superfamily db_id=SSF48371 from=5 to=342 evalue=1.6e-09 interpro_id=IPR016024 interpro_description=Armadillo-type fold GO=Molecular Function: binding (GO:0005488))
GWC2_PER_33_13_16_24
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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20141..21586
DNA (1446bp) protein (482aa)
Putative glycosyltransferase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZQ6_CALAS
Uncharacterized protein {ECO:0000313|EMBL:KKP38710.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
putative glycosyltransferase
seg (db=Seg db_id=seg from=58 to=75)
GWC2_PER_33_13_16_25
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(21918..23879)
DNA (1962bp) protein (654aa)
Cellulosome-anchoring protein n=1 Tax=sediment metagenome RepID=D9PNH4_9ZZZZ
Cellulosome-anchoring protein {ECO:0000313|EMBL:KKP36298.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
putative S-layer protein
gb def: Outer membrane protein alpha precursor (db=HMMPanther db_id=PTHR22909:SF9 from=93 to=143 evalue=0.0004)
GWC2_PER_33_13_16_26
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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24021..26669
DNA (2649bp) protein (883aa)
Protein translocase subunit SecA n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LX21_TEPAE rbh
secA; translocase binding subunit (ATPase) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
secA; translocase binding subunit (ATPase)
coiled-coil (db=Coil db_id=coil from=243 to=264 evalue=NA)
GWC2_PER_33_13_16_27
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(26759..26908)
DNA (150bp) protein (50aa)
Ribonucleotide reductase, stirrup Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
no description (db=Gene3D db_id=G3DSA:3.30.920.30 from=4 to=43 evalue=0.00027)
YcfA/nrd intein domain (db=superfamily db_id=SSF54786 from=4 to=48 evalue=2.9e-06 interpro_id=IPR015146 interpro_description=Ribonucleotide reductase, stirrup GO=Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
(db=HMMPfam db_id=PF07927 from=11 to=46 evalue=5.2e-07 interpro_id=IPR012933 interpro_description=Uncharacterised protein family UPF0395 GO=Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
GWC2_PER_33_13_16_28
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(26877..27140)
DNA (264bp) protein (88aa)
Uncharacterized protein family UPF0150 n=1 Tax=Thermodesulfobium narugense DSM 14796 RepID=M1E7L9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKP36301.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
hypothetical protein
seg (db=Seg db_id=seg from=63 to=76)
GWC2_PER_33_13_16_29
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(27270..27698)
DNA (429bp) protein (143aa)
PIN domain-like Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
PIN domain-like (db=superfamily db_id=SSF88723 from=1 to=117 evalue=4.6e-08)
GWC2_PER_33_13_16_30
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(27704..27955)
DNA (252bp) protein (84aa)
AbrB/MazE/MraZ-like Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
(db=HMMPfam db_id=PF04014 from=11 to=40 evalue=1.2e-06 interpro_id=IPR007159 interpro_description=Transcription regulator AbrB/SpoV, predicted)
AbrB/MazE/MraZ-like (db=superfamily db_id=SSF89447 from=1 to=75 evalue=2.2e-09)
Displaying items 1-30 of 31 in total

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