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gwc2_scaffold_2972

Alias: GWC2_PER_33_13_19

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_PER_33_13_19_1
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(104..934)
DNA (831bp) protein (277aa)
Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense (strain Y51) RepID=Q24SB9_DESHY rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP38386.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
seg (db=Seg db_id=seg from=263 to=273)
GWC2_PER_33_13_19_2
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(934..1860)
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense (strain Y51) RepID=Q24SC0_DESHY
Uncharacterized protein {ECO:0000313|EMBL:KKP38387.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
seg (db=Seg db_id=seg from=207 to=219)
GWC2_PER_33_13_19_3
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(1872..2240)
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=F3AKX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKP38388.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
GWC2_PER_33_13_19_4
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(2233..2904)
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Blautia RepID=A7AYT0_RUMGN
Integrase {ECO:0000313|EMBL:KKP38389.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
XerC; integrase
GWC2_PER_33_13_19_5
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(2867..4720)
DNA (1854bp) protein (618aa)
Site-specific recombinases, DNA invertase Pin homologs n=3 Tax=Clostridiales RepID=D4J6P6_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP38390.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
Site-specific recombinases, DNA invertase Pin homologs
seg (db=Seg db_id=seg from=369 to=380)
GWC2_PER_33_13_19_6
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(4831..5223)
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7AT66_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKP38391.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
Predicted transcriptional regulators
seg (db=Seg db_id=seg from=24 to=37)
GWC2_PER_33_13_19_7
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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5267..6094
DNA (828bp) protein (276aa)
DNA methylase N-4/N-6 domain protein n=1 Tax=Thermovirga lienii (strain ATCC BAA-1197 / DSM 17291 / Cas60314) RepID=G7V6T6_THELD rbh
Methylase N-4/N-6 domain-containing protein {ECO:0000313|EMBL:KKP38392.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
DNA methylase N-4/N-6 domain-containing protein
N6_MTASE (db=PatternScan db_id=PS00092 from=39 to=45 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
GWC2_PER_33_13_19_8
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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6085..6927
DNA (843bp) protein (281aa)
Adenine methylase, DNA adenine methylase protein {ECO:0000313|EMBL:KKP38393.1}; EC=2.1.1.72 {ECO:0000313|EMBL:KKP38393.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacte
DNA adenine methylase n=1 Tax=Thermodesulfobium narugense DSM 14796 RepID=M1E9C8_9FIRM rbh
DNA adenine methylase
N6_MTASE (db=PatternScan db_id=PS00092 from=189 to=195 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
GWC2_PER_33_13_19_9
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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6931..7515
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VR91_METIM
Uncharacterized protein {ECO:0000313|EMBL:KKP38394.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
seg (db=Seg db_id=seg from=144 to=154)
GWC2_PER_33_13_19_10
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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7517..8434
DNA (918bp) protein (306aa)
Type II restriction enzyme R protein, type II restriction enzyme {ECO:0000313|EMBL:KKP38395.1}; EC=3.1.21.4 {ECO:0000313|EMBL:KKP38395.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source
Type II site-specific deoxyribonuclease n=1 Tax=Crocosphaera watsonii WH 0003 RepID=G5J1T0_CROWT
Type II restriction endonuclease BstXII
Type II restriction endonuclease, MboI type (db=HMMPIR db_id=PIRSF016080 from=5 to=304 evalue=3.2e-97 interpro_id=IPR021191 interpro_description=Restriction endonuclease, type II, DpmII GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: Type II site-specific deoxyribonuclease activity (GO:0009036), Biological Process: DNA restriction-modification system (GO:0009307))
GWC2_PER_33_13_19_11
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(8436..8798)
DNA (363bp) protein (121aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38396.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
GWC2_PER_33_13_19_12
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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9265..10365
DNA (1101bp) protein (367aa)
KWG Leptospira repeat protein n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W5M0_9CYAN
KWG repeat-containing protein {ECO:0000313|EMBL:KKP38397.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
KWG repeat-containing protein
seg (db=Seg db_id=seg from=19 to=38)
GWC2_PER_33_13_19_13
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

10387..11187
DNA (801bp) protein (267aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38398.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
seg (db=Seg db_id=seg from=10 to=25)
GWC2_PER_33_13_19_14
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(11443..11748)
DNA (306bp) protein (102aa)
Uncharacterized protein n=3 Tax=Pseudomonas RepID=C3K8M1_PSEFS
Uncharacterized protein {ECO:0000313|EMBL:KKP38399.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=24 to=90 evalue=1.2e-12 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
GWC2_PER_33_13_19_15
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(11750..12109)
DNA (360bp) protein (120aa)
Putative uncharacterized protein n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NW10_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KKP38400.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
addiction module toxin RelE
(db=HMMPfam db_id=PF05973 from=14 to=108 evalue=1.5e-19 interpro_id=IPR009241 interpro_description=Addiction module killer protein)
GWC2_PER_33_13_19_16
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(12512..13264)
DNA (753bp) protein (251aa)
DNA integration/recombination/inversion protein n=2 Tax=Brevibacillus RepID=L5MZP5_9BACL
Resolvase family site-specific recombinase {ECO:0000313|EMBL:KKP38401.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
resolvase family site-specific recombinase
RECOMBINASES_1 (db=PatternScan db_id=PS00397 from=7 to=15 evalue=0.0 interpro_id=IPR006118 interpro_description=Recombinase, conserved site GO=Molecular Function: recombinase activity (GO:0000150), Biological Process: DNA recombination (GO:0006310))
GWC2_PER_33_13_19_17
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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13484..13642
DNA (159bp) protein (53aa)
Putative uncharacterized protein n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QQT0_ACEAZ
Uncharacterized protein {ECO:0000313|EMBL:KKP38402.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
coiled-coil (db=Coil db_id=coil from=18 to=39 evalue=NA)
GWC2_PER_33_13_19_18
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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14060..15424
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PKJ6_DESSD
Uncharacterized protein {ECO:0000313|EMBL:KKP38403.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
seg (db=Seg db_id=seg from=75 to=95)
GWC2_PER_33_13_19_19
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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15459..19316
DNA (3858bp) protein (1286aa)
Type I secretion target GGXGXDXXX repeat (2 copies) n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SQ59_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKP38404.1}; Flags: Fragment;; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
calcium-binding protein
seg (db=Seg db_id=seg from=313 to=331)
Displaying 19 items

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