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GWD2_DPX3_57_9_gwd2_scaffold_1046

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Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWD2_DPX3_57_9_gwd2_scaffold_1046_trna_1
unknown

Not on your lists

comp(143..215)
DNA (73bp)
transferRNA
GWD2_DPX3_57_9_gwd2_scaffold_1046_1
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

470..1324
DNA (855bp) protein (285aa)
peptidase, M48 family (EC:3.4.24.-); K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=GWC2_Nitrospirae_57_9_curated
M48 family peptidase (EC:3.4.24.-)
Protease HtpX homolog id=4734547 bin=GWC2_Deltaproteobacteria_55_46 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
GWD2_DPX3_57_9_gwd2_scaffold_1046_2
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

1525..2418
DNA (894bp) protein (298aa)
HAMP domain-containing protein Tax=GWC2_Nitrospirae_57_9_curated
Histidine kinase HAMP region domain protein id=4774229 bin=GWC2_Nitrospirae_57_13 species=Calothrix parietina genus=Calothrix taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
HAMP domain-containing protein
GWD2_DPX3_57_9_gwd2_scaffold_1046_3
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

2422..2994
DNA (573bp) protein (191aa)
hypothetical protein Tax=GWC2_Nitrospirae_57_9_curated
Putative uncharacterized protein id=1839585 bin=GWD2_Nitrospirae-related_57_8 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
GWD2_DPX3_57_9_gwd2_scaffold_1046_4
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(3103..3711)
DNA (609bp) protein (203aa)
formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit Tax=GWC2_Nitrospirae_57_9_curated
Formate dehydrogenase, cytochrome b subunit id=1978751 bin=GWB2_Desulfobacterales_56_26 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
formate dehydrogenase subunit gamma
GWD2_DPX3_57_9_gwd2_scaffold_1046_5
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(3708..4484)
DNA (777bp) protein (259aa)
4Fe-4S ferredoxin Tax=GWC2_Nitrospirae_57_9_curated
Formate dehydrogenase (Quinone-dependent) iron-sulfur subunit id=2170773 bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
4Fe-4S ferredoxin
GWD2_DPX3_57_9_gwd2_scaffold_1046_6
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(4494..6986)
DNA (2493bp) protein (831aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=GWC2_Nitrospirae_57_9_curated
formate dehydrogenase subuit alpha, selenocysteine-containing (EC:1.2.1.2)
Formate dehydrogenase, alpha subunit, selenocysteine-containing id=2170748 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
GWD2_DPX3_57_9_gwd2_scaffold_1046_7
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(7035..7640)
DNA (606bp) protein (202aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=GWC2_Nitrospirae_57_9_curated
Formate dehydrogenase (Quinone-dependent) catalytic subunit id=2170747 bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
formate dehydrogenase subunit alpha
GWD2_DPX3_57_9_gwd2_scaffold_1046_8
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

8152..8547
DNA (396bp) protein (132aa)
heat shock protein Hsp20 Tax=GWC2_Nitrospirae_57_9_curated
Heat shock protein Hsp20 id=3788141 bin=GWC2_Nitrospirae_57_13 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
heat shock protein Hsp20
GWD2_DPX3_57_9_gwd2_scaffold_1046_9
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

8614..10989
DNA (2376bp) protein (792aa)
ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=GWC2_Nitrospirae_57_9_curated
ATP-dependent protease La (EC:3.4.21.53)
Lon protease id=3788139 bin=GWC2_Nitrospirae_57_13 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
GWD2_DPX3_57_9_gwd2_scaffold_1046_10
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

10999..11850
DNA (852bp) protein (284aa)
lipA; lipoyl synthase (EC:2.8.1.-); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=GWC2_Nitrospirae_57_9_curated
lipA; lipoyl synthase (EC:2.8.1.8)
Lipoyl synthase id=3719975 bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
GWD2_DPX3_57_9_gwd2_scaffold_1046_11
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(12218..13105)
DNA (888bp) protein (296aa)
id=1826460 Tax=GWC2_Nitrospirae_57_9_curated
id=1826460 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
GWD2_DPX3_57_9_gwd2_scaffold_1046_12
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(13102..13698)
DNA (597bp) protein (199aa)
hypothetical protein; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15] Tax=GWC2_Nitrospirae_57_9_curated
Glycerol-3-phosphate acyltransferase id=1826457 bin=GWD2_Nitrospirae-related_57_8 species=Caulobacter segnis genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase
GWD2_DPX3_57_9_gwd2_scaffold_1046_13
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(13816..14403)
DNA (588bp) protein (196aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=GWC2_Nitrospirae_57_9_
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=1826455 bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
GWD2_DPX3_57_9_gwd2_scaffold_1046_14
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(14364..15263)
DNA (900bp) protein (300aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] Tax=GWC2_Nitrospirae_57_9_curated
Bacterial lipid A biosynthesis acyltransferase id=1826453 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
lipid A biosynthesis acyltransferase
GWD2_DPX3_57_9_gwd2_scaffold_1046_15
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(15260..15778)
DNA (519bp) protein (173aa)
phosphatase kdsC; K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] Tax=GWC2_Nitrospirae_57_9_curated
Phosphatase kdsC id=4536183 bin=GWC2_Nitrospirae_57_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
GWD2_DPX3_57_9_gwd2_scaffold_1046_16
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(15797..16765)
DNA (969bp) protein (323aa)
kdsD; arabinose-5-phosphate isomerase; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] Tax=GWC2_Nitrospirae_57_9_curated
KpsF/GutQ family protein id=1826449 bin=GWD2_Nitrospirae-related_57_8 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
D-arabinose 5-phosphate isomerase
GWD2_DPX3_57_9_gwd2_scaffold_1046_17
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(16762..16890)
DNA (129bp) protein (43aa)
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=GWC2_Nitrospirae_57_9_curated
2-dehydro-3-deoxyphosphooctonate aldolase id=1826447 bin=GWD2_Nitrospirae-related_57_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
2-dehydro-3-deoxyphosphooctonate aldolase
Displaying 18 items

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