ggKbase home page

GWD2_RBX1_39_127_gwd2_scaffold_1380

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWD2_RBX1_39_127_gwd2_scaffold_1380_1
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

192..2906
DNA (2715bp) protein (905aa)
SNF2-related protein (EC:2.7.11.1) Tax=GWF2_RBX1_38_17_curated
SNF2-related protein (EC:2.7.11.1)
SNF2 helicase associated domain protein id=1749023 bin=GWE2_RBX1_39_32 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_1380_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

2948..3880
DNA (933bp) protein (311aa)
rnhC; ribonuclease HIII (EC:3.1.26.4); K03471 ribonuclease HIII [EC:3.1.26.4] Tax=GWF2_RBX1_38_17_curated
rnhC; ribonuclease HIII (EC:3.1.26.4)
Ribonuclease id=1749024 bin=GWE2_RBX1_39_32 species=Anaerofustis stercorihominis genus=Anaerofustis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_1380_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

4019..5677
DNA (1659bp) protein (553aa)
cel; retaining beta-glycosidase (EC:3.2.1.4); K01179 endoglucanase [EC:3.2.1.4] Tax=GWF2_RBX1_38_17_curated
cel; retaining beta-glycosidase (EC:3.2.1.4)
Candidate retaining b-glycosidase, glycoside hydrolase family 5 protein id=1785511 bin=GWD2_RBX1-related_39_127 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_1380_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

5853..6761
DNA (909bp) protein (303aa)
uncharacterized protein involved in formation of curli polymers id=24609322 bin=RAAC11 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP
uncharacterized protein involved in formation of curli polymers Tax=GWF2_RBX1_38_17_curated
uncharacterized protein involved in formation of curli polymers
GWD2_RBX1_39_127_gwd2_scaffold_1380_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

6822..7523
DNA (702bp) protein (234aa)
id=1749027 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1749027 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_1380_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

7544..7813
DNA (270bp) protein (90aa)
Transcriptional regulator, AsnC family id=3912728 bin=GWF2_OP9-related_38_17 species=Methylophaga aminisulfidivorans genus=Methylophaga taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
AsnC family transcriptional regulator Tax=GWF2_RBX1_38_17_curated
AsnC family transcriptional regulator
GWD2_RBX1_39_127_gwd2_scaffold_1380_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(7832..9589)
DNA (1758bp) protein (586aa)
ABC transporter related protein id=1749029 bin=GWE2_RBX1_39_32 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial Tax=GWF2_RBX1_38_17_curated
ABC transporter
GWD2_RBX1_39_127_gwd2_scaffold_1380_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(9570..11294)
DNA (1725bp) protein (575aa)
ABC transporter related protein id=1749030 bin=GWE2_RBX1_39_32 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial Tax=GWF2_RBX1_38_17_curated
ABC transporter-like protein
GWD2_RBX1_39_127_gwd2_scaffold_1380_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(11953..12282)
DNA (330bp) protein (110aa)
Putative uncharacterized protein id=1749031 bin=GWE2_RBX1_39_32 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_1380_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

12558..13337
DNA (780bp) protein (260aa)
Restriction endonuclease, type I, EcoRI, R subunit/Type III id=1749032 bin=GWE2_RBX1_39_32 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
Restriction endonuclease, type I, EcoRI, R subunit/Type III
Displaying 10 items

View Taxonomy