ggKbase home page

GWD2_RBX1_39_127_gwd2_scaffold_181

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWD2_RBX1_39_127_gwd2_scaffold_181_1
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists


201..482
DNA (282bp) protein (94aa)
30S ribosomal protein S15 id=1922994 bin=GWE2_RBX1_39_32 species=unknown genus=Thermosipho taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=GWF2_RBX1_38_17_curated
30S ribosomal protein S15
GWD2_RBX1_39_127_gwd2_scaffold_181_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

541..2625
DNA (2085bp) protein (695aa)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Tax=GWF2_RBX1_38_17_curated
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase id=1922941 bin=GWE2_RBX1_39_32 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_181_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

2727..3977
DNA (1251bp) protein (417aa)
Peptidase M16 domain protein id=1831075 bin=GWD2_RBX1-related_39_127 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
peptidase M16 domain-containing protein Tax=GWF2_RBX1_38_17_curated
peptidase M16 domain-containing protein
GWD2_RBX1_39_127_gwd2_scaffold_181_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

3974..4420
DNA (447bp) protein (149aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; K01520 dUTP pyrophosphatase [EC:3.6.1.23] Tax=GWF2_RBX1_38_17_curated
Deoxyuridine 5'-triphosphate nucleotidohydrolase id=1831077 bin=GWD2_RBX1-related_39_127 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
GWD2_RBX1_39_127_gwd2_scaffold_181_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

4516..5247
DNA (732bp) protein (244aa)
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=GWF2_RBX1_38_17_curated
dihydrodipicolinate reductase (EC:1.3.1.26)
dihydrodipicolinate reductase id=1922935 bin=GWE2_RBX1_39_32 species=SAR324 cluster bacterium SCGC AAA001-C10 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_181_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

5320..6336
DNA (1017bp) protein (339aa)
asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] Tax=GWF2_RBX1_38_17_curated
asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase id=1831081 bin=GWD2_RBX1-related_39_127 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_181_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

6343..6933
DNA (591bp) protein (197aa)
Putative uncharacterized protein id=1922931 bin=GWE2_RBX1_39_32 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_181_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

6958..7842
DNA (885bp) protein (295aa)
dapA; dihydrodipicolinate synthase DapA (EC:4.2.1.52) Tax=GWF2_RBX1_38_17_curated
dapA; dihydrodipicolinate synthase DapA (EC:4.2.1.52)
Dihydrodipicolinate synthase DapA id=1831085 bin=GWD2_RBX1-related_39_127 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_181_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

7904..9508
DNA (1605bp) protein (535aa)
metallo-beta-lactamase superfamily hydrolase; K12574 ribonuclease J [EC:3.1.-.-] Tax=GWF2_RBX1_38_17_curated
Beta-lactamase domain protein id=1831087 bin=GWD2_RBX1-related_39_127 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
metallo-beta-lactamase superfamily hydrolase
GWD2_RBX1_39_127_gwd2_scaffold_181_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

9505..10110
DNA (606bp) protein (202aa)
hypothetical protein; K09765 hypothetical protein id=24610609 bin=RAAC11 species=Phascolarctobacterium succinatutens genus=Phascolarctobacterium taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
hypothetical protein; K09765 hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_181_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

10103..11161
DNA (1059bp) protein (353aa)
S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=GWF2_RBX1_38_17_curated
S-adenosylmethionine:tRNA ribosyltransferase-isomerase id=1922923 bin=GWE2_RBX1_39_32 species=Clostridium sp. L2-50 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
S-adenosylmethionine--tRNA ribosyltransferase-isomerase
GWD2_RBX1_39_127_gwd2_scaffold_181_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

11369..13513
DNA (2145bp) protein (715aa)
Methyl-accepting chemotaxis sensory transducer id=1831093 bin=GWD2_RBX1-related_39_127 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
methyl-accepting chemotaxis sensory transducer Tax=GWF2_RBX1_38_17_curated
methyl-accepting chemotaxis sensory transducer
GWD2_RBX1_39_127_gwd2_scaffold_181_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

13990..16089
DNA (2100bp) protein (700aa)
chemotaxis protein (EC:2.7.3.-); K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] Tax=GWF2_RBX1_38_17_curated
chemotaxis protein (EC:2.7.3.-)
Putative uncharacterized protein id=1922919 bin=GWE2_RBX1_39_32 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_181_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

16173..16688
DNA (516bp) protein (172aa)
Receptor-coupling factor, CheW id=1831097 bin=GWD2_RBX1-related_39_127 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
cheW; chemotaxis protein CheW CheW Tax=GWF2_RBX1_38_17_curated
cheW; chemotaxis protein CheW CheW
GWD2_RBX1_39_127_gwd2_scaffold_181_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

16747..17550
DNA (804bp) protein (268aa)
chemotaxis protein CheR (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80] Tax=GWF2_RBX1_38_17_curated
chemotaxis protein CheR (EC:2.1.1.80)
Chemotaxis protein methyltransferase id=1831099 bin=GWD2_RBX1-related_39_127 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_181_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

17602..18081
DNA (480bp) protein (160aa)
CheD, stimulates methylation of MCP protein; K03411 chemotaxis protein CheD [EC:3.5.1.44] Tax=GWF2_RBX1_38_17_curated
Probable chemoreceptor glutamine deamidase CheD id=1922912 bin=GWE2_RBX1_39_32 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
CheD, stimulates methylation of MCP protein
GWD2_RBX1_39_127_gwd2_scaffold_181_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

18078..18929
DNA (852bp) protein (284aa)
Putative signal transduction protein id=1831103 bin=GWD2_RBX1-related_39_127 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_181_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

19015..20058
DNA (1044bp) protein (348aa)
response regulator receiver modulated chemotaxis protein CheB (EC:3.1.1.61); K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61] Tax=GWF2_RBX1_38_17_curated
response regulator receiver modulated chemotaxis protein CheB (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase id=1922906 bin=GWE2_RBX1_39_32 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_181_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

20224..20703
DNA (480bp) protein (160aa)
Hypothetical cytosolic protein id=1922903 bin=GWE2_RBX1_39_32 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
cytoplasmic protein Tax=GWF2_RBX1_38_17_curated
cytoplasmic protein
GWD2_RBX1_39_127_gwd2_scaffold_181_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

20696..21070
DNA (375bp) protein (125aa)
Putative chemotaxis response regulator receiver (CheY-like) id=4397721 bin=GWF2_OP9-related_38_17 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
putative chemotaxis response regulator receiver (CheY-like); K03413 two-component system, chemotaxis family, response regulator CheY Tax=GWF2_RBX1_38_17_curated
chemotaxis protein CheY
GWD2_RBX1_39_127_gwd2_scaffold_181_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

21098..21472
DNA (375bp) protein (125aa)
Chemotaxis protein cheY id=1831111 bin=GWD2_RBX1-related_39_127 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
chemotaxis protein Y, response regulator CheY Tax=GWF2_RBX1_38_17_curated
chemotaxis protein Y, response regulator CheY
GWD2_RBX1_39_127_gwd2_scaffold_181_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

21554..23359
DNA (1806bp) protein (602aa)
Elongation factor 4 id=1922893 bin=GWE2_RBX1_39_32 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GTP-binding protein LepA; K03596 GTP-binding protein LepA Tax=GWF2_RBX1_38_17_curated
GTP-binding protein LepA
GWD2_RBX1_39_127_gwd2_scaffold_181_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

23362..24537
DNA (1176bp) protein (392aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] id=24610596 bin=RAAC11 species=Clostridium botulinum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=GWF2_RBX1_38_17_curated
coproporphyrinogen III oxidase (EC:1.3.99.22)
GWD2_RBX1_39_127_gwd2_scaffold_181_24
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

24819..29675
DNA (4857bp) protein (1619aa)
id=1922890 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1922890 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_181_25
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(29665..30585)
DNA (921bp) protein (307aa)
L-lactate dehydrogenase; K00016 L-lactate dehydrogenase [EC:1.1.1.27] Tax=GWF2_RBX1_38_17_curated
L-lactate dehydrogenase id=1831159 bin=GWD2_RBX1-related_39_127 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
lactate dehydrogenase
GWD2_RBX1_39_127_gwd2_scaffold_181_26
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

30739..33141
DNA (2403bp) protein (801aa)
peptidase S8 and S53 subtilisin kexin sedolisin Tax=GWF2_RBX1_38_17_curated
Peptidase S8 and S53 subtilisin kexin sedolisin id=1831161 bin=GWD2_RBX1-related_39_127 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
peptidase S8 and S53 subtilisin kexin sedolisin
GWD2_RBX1_39_127_gwd2_scaffold_181_27
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(33160..33504)
DNA (345bp) protein (115aa)
UPF0102 protein NAL212_2320 id=1922848 bin=GWE2_RBX1_39_32 species=Nitrosomonas sp. AL212 genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein; K07460 putative endonuclease Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_181_28
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(33515..34141)
DNA (627bp) protein (209aa)
RNase HII; K03470 ribonuclease HII [EC:3.1.26.4] Tax=GWF2_RBX1_38_17_curated
rnhB; Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII id=1831165 bin=GWD2_RBX1-related_39_127 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_181_29
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(34141..35379)
DNA (1239bp) protein (413aa)
3-oxoacyl-(acyl-carrier-protein) synthase 2; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=GWF2_RBX1_38_17_curated
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=1922846 bin=GWE2_RBX1_39_32 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
3-oxoacyl-(acyl-carrier-protein) synthase 2
GWD2_RBX1_39_127_gwd2_scaffold_181_30
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(35395..36345)
DNA (951bp) protein (317aa)
2-nitropropane dioxygenase NPD id=1831169 bin=GWD2_RBX1-related_39_127 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
2-nitropropane dioxygenase Tax=GWF2_RBX1_38_17_curated
2-nitropropane dioxygenase
Displaying items 1-30 of 53 in total

View Taxonomy