ggKbase home page

GWD2_RBX1_39_127_gwd2_scaffold_129

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWD2_RBX1_39_127_gwd2_scaffold_129_1
unknown

Not on your lists

comp(49..660)
DNA (612bp) protein (204aa)
id=1771178 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1771178 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_129_2
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(957..2141)
DNA (1185bp) protein (395aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
multi-sensor signal transduction histidine kinase id=24610356 bin=RAAC11 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP
multi-sensor signal transduction histidine kinase
GWD2_RBX1_39_127_gwd2_scaffold_129_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(2190..3413)
DNA (1224bp) protein (408aa)
Multi-sensor signal transduction histidine kinase id=1774240 bin=GWD2_RBX1-related_39_127 species=Chroococcidiopsis thermalis genus=Chroococcidiopsis taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
multi-sensor signal transduction histidine kinase Tax=GWF2_RBX1_38_17_curated
multi-sensor signal transduction histidine kinase
GWD2_RBX1_39_127_gwd2_scaffold_129_4
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3443..3751)
DNA (309bp) protein (103aa)
KaiB domain-containing protein; K08481 circadian clock protein KaiB id=24610354 bin=RAAC11 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP
KaiB-like protein 1 {ECO:0000313|EMBL:CBX29868.1}; TaxID=201089 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;
KaiB domain-containing protein
GWD2_RBX1_39_127_gwd2_scaffold_129_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(3756..5213)
DNA (1458bp) protein (486aa)
circadian clock protein KaiC (EC:2.7.11.1); K08482 circadian clock protein KaiC id=24610353 bin=RAAC11 species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RAAC11 organism_group=Unknown_CP
circadian clock protein KaiC (EC:2.7.11.1); K08482 circadian clock protein KaiC Tax=GWF2_RBX1_38_17_curated
circadian clock protein KaiC (EC:2.7.11.1)
GWD2_RBX1_39_127_gwd2_scaffold_129_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(5310..13958)
DNA (8649bp) protein (2883aa)
Putative uncharacterized protein id=1774249 bin=GWD2_RBX1-related_39_127 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
glycosyltransferase Tax=GWF2_RBX1_38_17_curated
NdvB
GWD2_RBX1_39_127_gwd2_scaffold_129_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(14561..14755)
DNA (195bp) protein (65aa)
id=1774252 bin=GWD2_RBX1-related_39_127 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
id=1771167 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_129_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(14852..15034)
DNA (183bp) protein (61aa)
id=24610350 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_129_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

15248..15712
DNA (465bp) protein (155aa)
id=1774253 bin=GWD2_RBX1-related_39_127 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
id=1771164 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_129_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(15722..16105)
DNA (384bp) protein (128aa)
Response regulator receiver protein id=1771162 bin=GWE2_RBX1_39_32 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
Response regulator receiver protein Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_129_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(16105..17295)
DNA (1191bp) protein (397aa)
id=1771161 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1771161 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_129_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(17319..19541)
DNA (2223bp) protein (741aa)
signal transduction histidine kinase; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=GWF2_RBX1_38_17_curated
Signal transduction histidine kinase id=4117193 bin=GWF2_OP9-related_38_17 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
signal transduction histidine kinase
GWD2_RBX1_39_127_gwd2_scaffold_129_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(19549..20127)
DNA (579bp) protein (193aa)
id=1971683 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1971683 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_129_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(20527..20763)
DNA (237bp) protein (79aa)
id=24610344 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24610344 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_129_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

20801..20995
DNA (195bp) protein (65aa)
Uncharacterized protein id=1774306 bin=GWD2_RBX1-related_39_127 species=Methanoculleus bourgensis genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_129_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(21055..21318)
DNA (264bp) protein (88aa)
id=1971686 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1971686 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_129_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(21476..24229)
DNA (2754bp) protein (918aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] Tax=GWF2_RBX1_38_17_curated
DNA polymerase id=1774310 bin=GWD2_RBX1-related_39_127 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
DNA polymerase I
GWD2_RBX1_39_127_gwd2_scaffold_129_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(24462..24959)
DNA (498bp) protein (166aa)
id=1971693 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1971693 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_129_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

25128..25838
DNA (711bp) protein (237aa)
pseudouridylate synthase; K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] id=24610339 bin=RAAC11 species=Brachyspira hyodysenteriae genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=RAAC11 organism_group=Unknown_CP
pseudouridylate synthase; K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] Tax=GWF2_RBX1_38_17_curated
pseudouridylate synthase
GWD2_RBX1_39_127_gwd2_scaffold_129_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

26025..27254
DNA (1230bp) protein (410aa)
peptidase, U32 family; K08303 putative protease [EC:3.4.-.-] id=24610338 bin=RAAC11 species=Filifactor alocis genus=Filifactor taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
peptidase, U32 family; K08303 putative protease [EC:3.4.-.-] Tax=GWF2_RBX1_38_17_curated
peptidase, U32 family
GWD2_RBX1_39_127_gwd2_scaffold_129_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

27377..27970
DNA (594bp) protein (198aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] Tax=GWF2_RBX1_38_17_curated
exopolyphosphatase id=1774315 bin=GWD2_RBX1-related_39_127 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
Ppx/GppA phosphatase
GWD2_RBX1_39_127_gwd2_scaffold_129_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(27957..28112)
DNA (156bp) protein (52aa)
id=1971708 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1971708 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_129_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

28229..29050
DNA (822bp) protein (274aa)
PHP domain protein id=1971709 bin=GWE2_RBX1_39_32 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
PHP domain-containing protein; K07053 Tax=GWF2_RBX1_38_17_curated
PHP domain-containing protein
GWD2_RBX1_39_127_gwd2_scaffold_129_24
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(29042..29656)
DNA (615bp) protein (205aa)
trmB; tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] Tax=GWF2_RBX1_38_17_curated
tRNA (guanine-N(7)-)-methyltransferase id=1971714 bin=GWE2_RBX1_39_32 species=unknown genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
trmB; tRNA (guanine-N(7)-)-methyltransferase
GWD2_RBX1_39_127_gwd2_scaffold_129_25
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(29656..29853)
DNA (198bp) protein (66aa)
Uncharacterized protein id=1774319 bin=GWD2_RBX1-related_39_127 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_129_trna_2
unknown

Not on your lists

comp(30017..30100)
DNA (84bp)
transferRNA
GWD2_RBX1_39_127_gwd2_scaffold_129_26
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(30159..30830)
DNA (672bp) protein (224aa)
id=1971726 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1971726 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_129_27
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(30859..31077)
DNA (219bp) protein (73aa)
Preprotein translocase, SecG subunit id=1971727 bin=GWE2_RBX1_39_32 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=GWF2_RBX1_38_17_curated
secG; preprotein translocase subunit SecG
GWD2_RBX1_39_127_gwd2_scaffold_129_28
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(31141..32664)
DNA (1524bp) protein (508aa)
phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] Tax=GWF2_RBX1_38_17_curated
phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase id=1774322 bin=GWD2_RBX1-related_39_127 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_129_29
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(32761..34107)
DNA (1347bp) protein (449aa)
Putative uncharacterized protein id=1971762 bin=GWE2_RBX1_39_32 species=Synergistes sp. 3_1_syn1 genus=Synergistes taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
outer membrane protein M1 Tax=GWF2_RBX1_38_17_curated
outer membrane protein M1
Displaying items 1-30 of 66 in total

View Taxonomy