ggKbase home page

GWD2_RBX1_39_127_gwd2_scaffold_153

Search features with annotation key words

Displaying items 1-30 of 55 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWD2_RBX1_39_127_gwd2_scaffold_153_1
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

176..1135
DNA (960bp) protein (320aa)
id=2148147 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2148147 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_153_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

1140..2501
DNA (1362bp) protein (454aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=1802675 bin=GWD2_RBX1-related_39_127 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
two component sigma-54 specific Fis family transcriptional regulator Tax=GWF2_RBX1_38_17_curated
two component sigma-54 specific Fis family transcriptional regulator
GWD2_RBX1_39_127_gwd2_scaffold_153_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(2487..4991)
DNA (2505bp) protein (835aa)
putative histidine kinase (EC:2.7.13.3) Tax=GWF2_RBX1_38_17_curated
putative histidine kinase (EC:2.7.13.3)
Putative Histidine kinase, contains GAF domain id=1802677 bin=GWD2_RBX1-related_39_127 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_153_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(4930..5064)
DNA (135bp) protein (45aa)
id=2148150 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2148150 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_153_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(5309..5833)
DNA (525bp) protein (175aa)
fumarate hydratase subunit beta (EC:4.2.1.2); K01678 fumarate hydratase subunit beta [EC:4.2.1.2] Tax=GWF2_RBX1_38_17_curated
putative fumarate hydratase subunit beta (Fumarase) (EC:4.2.1.2)
Fumarate hydratase class I, aerobic L(+)-tartrate dehydratase beta subunit id=2148151 bin=GWE2_RBX1_39_32 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_153_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(5826..6377)
DNA (552bp) protein (184aa)
5-formyltetrahydrofolate cyclo-ligase (EC:6.3.3.2); K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] Tax=GWF2_RBX1_38_17_curated
5-formyltetrahydrofolate cyclo-ligase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase id=1802682 bin=GWD2_RBX1-related_39_127 species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_153_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(6395..7237)
DNA (843bp) protein (281aa)
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2); K01677 fumarate hydratase subunit alpha [EC:4.2.1.2] Tax=GWF2_RBX1_38_17_curated
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit id=1802684 bin=GWD2_RBX1-related_39_127 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_153_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(7237..8496)
DNA (1260bp) protein (420aa)
icd; isocitrate dehydrogenase, nADP-dependent; K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=GWF2_RBX1_38_17_curated
Isocitrate dehydrogenase [NADP] id=1802686 bin=GWD2_RBX1-related_39_127 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
icd; isocitrate dehydrogenase, nADP-dependent
GWD2_RBX1_39_127_gwd2_scaffold_153_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(8613..9116)
DNA (504bp) protein (168aa)
3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] Tax=GWF2_RBX1_38_17_curated
3-isopropylmalate dehydratase small subunit id=2148155 bin=GWE2_RBX1_39_32 species=Methanosalsum zhilinae genus=Methanosalsum taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
3-isopropylmalate dehydratase small subunit
GWD2_RBX1_39_127_gwd2_scaffold_153_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(9133..10386)
DNA (1254bp) protein (418aa)
homoaconitate hydratase family protein (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=GWF2_RBX1_38_17_curated
homoaconitate hydratase family protein (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit id=1802723 bin=GWD2_RBX1-related_39_127 species=Methanosalsum zhilinae genus=Methanosalsum taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_153_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(10401..12215)
DNA (1815bp) protein (605aa)
Pyruvate carboxyltransferase id=2148157 bin=GWE2_RBX1_39_32 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
pyruvate carboxyltransferase Tax=GWF2_RBX1_38_17_curated
pyruvate carboxyltransferase
GWD2_RBX1_39_127_gwd2_scaffold_153_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(12393..14975)
DNA (2583bp) protein (861aa)
alpha-amylase/alpha-mannosidase Tax=GWF2_RBX1_38_17_curated
Glycoside hydrolase family 57 id=1802729 bin=GWD2_RBX1-related_39_127 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
alpha-amylase/alpha-mannosidase
GWD2_RBX1_39_127_gwd2_scaffold_153_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(15131..15640)
DNA (510bp) protein (170aa)
Flavin reductase domain protein FMN-binding id=2148159 bin=GWE2_RBX1_39_32 species=Archaeoglobus sulfaticallidus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
Conserved protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family Tax=GWF2_RBX1_38_17_curated
Conserved protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family
GWD2_RBX1_39_127_gwd2_scaffold_153_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

15817..16176
DNA (360bp) protein (120aa)
VanZ like family id=2148160 bin=GWE2_RBX1_39_32 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
vanz family protein Tax=GWF2_RBX1_38_17_curated
vanz family protein
GWD2_RBX1_39_127_gwd2_scaffold_153_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

16368..19001
DNA (2634bp) protein (878aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=GWF2_RBX1_38_17_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase id=2148161 bin=GWE2_RBX1_39_32 species=unknown genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_153_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

19002..19808
DNA (807bp) protein (269aa)
murI; glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3] Tax=GWF2_RBX1_38_17_curated
Glutamate racemase id=1802742 bin=GWD2_RBX1-related_39_127 species=[Clostridium] difficile genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
murI; glutamate racemase
GWD2_RBX1_39_127_gwd2_scaffold_153_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

19909..20265
DNA (357bp) protein (119aa)
queuosine biosynthesis protein QueD; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=GWF2_RBX1_38_17_curated
6-carboxy-5,6,7,8-tetrahydropterin synthase id=1802745 bin=GWD2_RBX1-related_39_127 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
6-pyruvoyl tetrahydrobiopterin synthase
GWD2_RBX1_39_127_gwd2_scaffold_153_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

20327..20977
DNA (651bp) protein (217aa)
7-cyano-7-deazaguanine synthase id=2148212 bin=GWE2_RBX1_39_32 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
exoenzyme S synthesis protein B; K06920 queuosine biosynthesis protein QueC Tax=GWF2_RBX1_38_17_curated
exoenzyme S synthesis protein B
GWD2_RBX1_39_127_gwd2_scaffold_153_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(20974..22095)
DNA (1122bp) protein (374aa)
cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] Tax=GWF2_RBX1_38_17_curated
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Cyclopropane-fatty-acyl-phospholipid synthase id=2148214 bin=GWE2_RBX1_39_32 species=Denitrovibrio acetiphilus genus=Denitrovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_153_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(22116..22580)
DNA (465bp) protein (155aa)
id=2148215 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2148215 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_153_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(22605..23120)
DNA (516bp) protein (172aa)
id=2148216 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2148216 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_153_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

23440..24003
DNA (564bp) protein (188aa)
id=2148217 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2148217 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_153_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

24281..25174
DNA (894bp) protein (298aa)
Flagellar protein FlgJ id=2148218 bin=GWE2_RBX1_39_32 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
lytic transglycosylase Tax=GWF2_RBX1_38_17_curated
lytic transglycosylase
GWD2_RBX1_39_127_gwd2_scaffold_153_24
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

25496..27325
DNA (1830bp) protein (610aa)
GTP-binding protein TypA; K06207 GTP-binding protein Tax=GWF2_RBX1_38_17_curated
GTP-binding protein TypA id=1802760 bin=GWD2_RBX1-related_39_127 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GTP-binding protein TypA
GWD2_RBX1_39_127_gwd2_scaffold_153_25
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

27400..27657
DNA (258bp) protein (86aa)
id=1951265 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1951265 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_153_26
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(27747..28775)
DNA (1029bp) protein (343aa)
TrkA-N domain-containing protein id=24608845 bin=RAAC11 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP
TrkA-N domain-containing protein Tax=GWF2_RBX1_38_17_curated
TrkA-N domain-containing protein
GWD2_RBX1_39_127_gwd2_scaffold_153_27
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

28943..30763
DNA (1821bp) protein (607aa)
adenylate/guanylate cyclase with Chase sensor; K01768 adenylate cyclase [EC:4.6.1.1] Tax=GWF2_RBX1_38_17_curated
Putative Adenylate cyclase id=1951261 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
adenylate/guanylate cyclase with Chase sensor
GWD2_RBX1_39_127_gwd2_scaffold_153_28
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

30794..33691
DNA (2898bp) protein (966aa)
Uncharacterized protein Tax=GWF2_RBX1_38_17_curated
Uncharacterized protein id=1951258 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_153_29
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

33691..34665
DNA (975bp) protein (325aa)
id=1951257 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1951257 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_153_30
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

34669..37059
DNA (2391bp) protein (797aa)
PKD domain-containing protein Tax=GWF2_RBX1_38_17_curated
PKD domain containing protein id=1951255 bin=GWE2_RBX1_39_32 species=Methylomonas methanica genus=Methylomonas taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
PKD domain-containing protein
Displaying items 1-30 of 55 in total

View Taxonomy