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GWD2_RBX1_39_127_gwd2_scaffold_448

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWD2_RBX1_39_127_gwd2_scaffold_448_1
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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163..543
DNA (381bp) protein (127aa)
hypothetical protein id=24609041 bin=RAAC11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RAAC11 organism_group=Unknown_CP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26443.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniired
GWD2_RBX1_39_127_gwd2_scaffold_448_2
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(523..1113)
DNA (591bp) protein (197aa)
id=24609033 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
Calcium-binding EF-hand {ECO:0000313|EMBL:BAO28310.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogen
GWD2_RBX1_39_127_gwd2_scaffold_448_3
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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1883..4117
DNA (2235bp) protein (745aa)
ATP-dependent DNA helicase DinG id=1993988 bin=GWD2_RBX1-related_39_127 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
dinG; ATP-dependent DNA helicase DinG
ATP-dependent DNA helicase DinG {ECO:0000313|EMBL:ACH40762.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter b
GWD2_RBX1_39_127_gwd2_scaffold_448_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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4231..5466
DNA (1236bp) protein (412aa)
signal transduction histidine kinase; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=GWF2_RBX1_38_17_curated
Sensor histidine kinase of a two component response regulator id=1993992 bin=GWD2_RBX1-related_39_127 species=Leptospira biflexa genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
putative two-component sensor histidine kinase
GWD2_RBX1_39_127_gwd2_scaffold_448_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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5497..5592
DNA (96bp) protein (32aa)
id=2145071 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2145071 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_448_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

5904..6035
DNA (132bp) protein (44aa)
id=2145072 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2145072 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_448_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

6058..6489
DNA (432bp) protein (144aa)
Restriction endonuclease S subunit id=2145073 bin=GWE2_RBX1_39_32 species=Ornithobacterium rhinotracheale genus=Ornithobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
Restriction endonuclease S subunit Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_448_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

6486..6818
DNA (333bp) protein (111aa)
Putative uncharacterized protein id=1994007 bin=GWD2_RBX1-related_39_127 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_448_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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7004..7534
DNA (531bp) protein (177aa)
id=24609026 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24609026 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_448_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(7596..10166)
DNA (2571bp) protein (857aa)
ATP-dependent chaperone clpb; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB id=24609025 bin=RAAC11 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP
ATP-dependent chaperone clpb; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB Tax=GWF2_RBX1_38_17_curated
ATP-dependent chaperone clpb
GWD2_RBX1_39_127_gwd2_scaffold_448_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

10466..11338
DNA (873bp) protein (291aa)
id=2145082 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2145082 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_448_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(11808..12899)
DNA (1092bp) protein (364aa)
Uncharacterized protein id=2145083 bin=GWE2_RBX1_39_32 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_448_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(12838..14727)
DNA (1890bp) protein (630aa)
type IIs modification methyltransferase; K06223 DNA adenine methylase [EC:2.1.1.72] Tax=GWF2_RBX1_38_17_curated
dpnM; modification methylase DpnIIA (EC:2.1.1.72)
Type IIs modification methyltransferase id=2145140 bin=GWE2_RBX1_39_32 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_448_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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15464..18226
DNA (2763bp) protein (921aa)
isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] Tax=GWF2_RBX1_38_17_curated
Isoleucine--tRNA ligase id=2145144 bin=GWE2_RBX1_39_32 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
isoleucyl-tRNA synthetase
GWD2_RBX1_39_127_gwd2_scaffold_448_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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18289..19206
DNA (918bp) protein (306aa)
PfkB domain protein id=2145147 bin=GWE2_RBX1_39_32 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
PfkB domain-containing protein Tax=GWF2_RBX1_38_17_curated
ribokinase-like protein
GWD2_RBX1_39_127_gwd2_scaffold_448_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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19319..20719
DNA (1401bp) protein (467aa)
adenosylhomocysteinase; K01251 adenosylhomocysteinase [EC:3.3.1.1] id=24611033 bin=RAAC11 species=Geovibrio thiophilus genus=Geovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=RAAC11 organism_group=Unknown_CP
adenosylhomocysteinase; K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=GWF2_RBX1_38_17_curated
adenosylhomocysteinase (EC:3.3.1.1)
GWD2_RBX1_39_127_gwd2_scaffold_448_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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20749..21312
DNA (564bp) protein (188aa)
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] Tax=GWF2_RBX1_38_17_cu
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15)
Biotin--acetyl-CoA-carboxylase ligase id=2145153 bin=GWE2_RBX1_39_32 species=Alkaliphilus oremlandii genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_448_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

21363..21731
DNA (369bp) protein (123aa)
chorismate mutase; K06208 chorismate mutase [EC:5.4.99.5] Tax=GWF2_RBX1_38_17_curated
Chorismate mutase id=1994039 bin=GWD2_RBX1-related_39_127 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
chorismate mutase
GWD2_RBX1_39_127_gwd2_scaffold_448_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

21758..22627
DNA (870bp) protein (290aa)
prephenate dehydrogenase; K04517 prephenate dehydrogenase [EC:1.3.1.12] Tax=GWF2_RBX1_38_17_curated
Prephenate dehydrogenase id=1994044 bin=GWD2_RBX1-related_39_127 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
prephenate dehydrogenase
GWD2_RBX1_39_127_gwd2_scaffold_448_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

22664..22882
DNA (219bp) protein (73aa)
id=2145159 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2145159 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_448_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

22901..23548
DNA (648bp) protein (216aa)
Uncharacterized protein id=2145160 bin=GWE2_RBX1_39_32 species=Tepidanaerobacter acetatoxydans genus=Tepidanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
metV; 5,10-methylene-tetrahydrofolate reductase subunit MetV
GWD2_RBX1_39_127_gwd2_scaffold_448_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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23575..24459
DNA (885bp) protein (295aa)
Methylenetetrahydrofolate reductase id=2145162 bin=GWE2_RBX1_39_32 species=Methanomethylovorans hollandica genus=Methanomethylovorans taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
5,10-methylenetetrahydrofolate reductase Tax=GWF2_RBX1_38_17_curated
5,10-methylenetetrahydrofolate reductase
GWD2_RBX1_39_127_gwd2_scaffold_448_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists


24520..24894
DNA (375bp) protein (125aa)
50S ribosomal protein L21 id=3964772 bin=GWF2_OP9-related_38_17 species=Oribacterium sp. oral taxon 078 genus=Oribacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
LSU ribosomal protein L21P Tax=GWF2_RBX1_38_17_curated
50S ribosomal protein L21
GWD2_RBX1_39_127_gwd2_scaffold_448_24
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists


24967..25221
DNA (255bp) protein (85aa)
50S ribosomal protein L27 id=1994061 bin=GWD2_RBX1-related_39_127 species=unknown genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=GWF2_RBX1_38_17_curated
50S ribosomal protein L27
GWD2_RBX1_39_127_gwd2_scaffold_448_25
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

25299..26339
DNA (1041bp) protein (347aa)
GTPase obg id=1994066 bin=GWD2_RBX1-related_39_127 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GTP1/OBG sub domain-containing protein; K03979 GTP-binding protein Tax=GWF2_RBX1_38_17_curated
GTP1/OBG sub domain-containing protein
GWD2_RBX1_39_127_gwd2_scaffold_448_26
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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26383..27156
DNA (774bp) protein (258aa)
glutamate 5-kinase (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11] Tax=GWF2_RBX1_38_17_curated
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase id=2145167 bin=GWE2_RBX1_39_32 species=Clostridium carboxidivorans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_448_27
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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27170..28417
DNA (1248bp) protein (416aa)
Gamma-glutamyl phosphate reductase id=1994074 bin=GWD2_RBX1-related_39_127 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
gamma-glutamyl phosphate reductase Tax=GWF2_RBX1_38_17_curated
gamma-glutamyl phosphate reductase
GWD2_RBX1_39_127_gwd2_scaffold_448_28
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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28552..29550
DNA (999bp) protein (333aa)
UDP-glucose-4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=GWF2_RBX1_38_17_curated
UDP-glucose-4-epimerase id=1994078 bin=GWD2_RBX1-related_39_127 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
UDP-glucose-4-epimerase
GWD2_RBX1_39_127_gwd2_scaffold_448_29
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

29540..30604
DNA (1065bp) protein (355aa)
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22 5.3.1.8); K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] Tax=GWF2_RBX1_38_17_curated
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22 5.3.1.8)
Mannose-1-phosphate guanylyltransferase (GDP); mannose-6-phosphate isomerase, type 2 id=2145174 bin=GWE2_RBX1_39_32 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_448_30
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(30692..31963)
DNA (1272bp) protein (424aa)
ABC-type branched-E47chain amino acid transporter, periplasmic binding protein id=2145176 bin=GWE2_RBX1_39_32 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
branched-chain amino acid ABC transporter periplasmic protein Tax=GWF2_RBX1_38_17_curated
branched-chain amino acid ABC transporter substrate-binding protein
Displaying items 1-30 of 31 in total

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