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GWD2_RBX1_39_127_gwd2_scaffold_414

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWD2_RBX1_39_127_gwd2_scaffold_414_1
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(142..1461)
DNA (1320bp) protein (440aa)
enolase (EC:4.2.1.11) Tax=GWE2_Bacteroidetes_40_63_curated
enolase (EC:4.2.1.11)
Enolase id=1978298 bin=GWD2_RBX1-related_39_127 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_414_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(1621..2001)
DNA (381bp) protein (127aa)
luxQ1; autoinducer 2 sensor kinase/phosphatase LuxQ (EC:2.7.13.3 3.1.3.-)
adenylate/guanylate cyclase id=24609366 bin=RAAC11 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=RAAC11 organism_group=Unknown_CP
histidine kinase Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_414_3
RIFOXYD2_FULL_Elusimicrobia_34_30_curated, Elusimicrobia, Bacteria

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comp(2020..2934)
DNA (915bp) protein (305aa)
Putative uncharacterized protein id=1978301 bin=GWD2_RBX1-related_39_127 species=Clostridium botulinum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
dipeptidyl aminopeptidases/acylaminoacyl-peptidase Tax=RIFOXYD2_FULL_Elusimicrobia_34_30_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_414_4
unknown

Not on your lists

comp(3024..4157)
DNA (1134bp) protein (378aa)
id=24609368 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24609368 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
GWD2_RBX1_39_127_gwd2_scaffold_414_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

5001..5381
DNA (381bp) protein (127aa)
hydrogenase transcriptional regulator hupR1 id=24609369 bin=RAAC11 species=Vibrio cholerae genus=Vibrio taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP
hydrogenase transcriptional regulator hupR1 Tax=GWF2_RBX1_38_17_curated
two-component regulatory system, response regulator protein (Hydrogenase transcriptional regulatory protein hupR1)
GWD2_RBX1_39_127_gwd2_scaffold_414_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

5622..6617
DNA (996bp) protein (332aa)
rfbB2; dTDP-glucose 4,6-dehydratase RfbB2 (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=GWF2_RBX1_38_17_curated
rfbB2; dTDP-glucose 4,6-dehydratase RfbB2 (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase RfbB1 id=2105427 bin=GWE2_RBX1_39_32 species=Methanobrevibacter ruminantium genus=Methanobrevibacter taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_414_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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6628..7230
DNA (603bp) protein (201aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=GWF2_RBX1_38_17_curated
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase id=2105430 bin=GWE2_RBX1_39_32 species=Aminobacterium colombiense genus=Aminobacterium taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_414_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

7259..9499
DNA (2241bp) protein (747aa)
PurL2; phosphoribosylformylglycinamidine synthase II; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] Tax=GWF2_RBX1_38_17_curated
Phosphoribosylformylglycinamidine synthase 2 id=2105433 bin=GWE2_RBX1_39_32 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
PurL2; phosphoribosylformylglycinamidine synthase II
GWD2_RBX1_39_127_gwd2_scaffold_414_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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9516..10895
DNA (1380bp) protein (460aa)
amidophosphoribosyltransferase; K00764 amidophosphoribosyltransferase [EC:2.4.2.14] Tax=GWF2_RBX1_38_17_curated
amidophosphoribosyltransferase id=1978307 bin=GWD2_RBX1-related_39_127 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
amidophosphoribosyltransferase
GWD2_RBX1_39_127_gwd2_scaffold_414_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

10917..11489
DNA (573bp) protein (191aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] id=24609374 bin=RAAC11 species=Thermotoga lettingae genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=RAAC11 organism_group=Unknown_CP
coaE; dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=GWF2_RBX1_38_17_curated
coaE; dephospho-CoA kinase (EC:2.7.1.24)
GWD2_RBX1_39_127_gwd2_scaffold_414_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(11613..12755)
DNA (1143bp) protein (381aa)
Glycosyl transferase family 2 id=2105461 bin=GWE2_RBX1_39_32 species=Clostridium papyrosolvens genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
glycosyl transferase family protein Tax=GWF2_RBX1_38_17_curated
glycosyl transferase family protein
GWD2_RBX1_39_127_gwd2_scaffold_414_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

13359..13760
DNA (402bp) protein (134aa)
UPF0047 protein Bsu YugU id=1978310 bin=GWD2_RBX1-related_39_127 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
secondary thiamine-phosphate synthase enzyme Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_414_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

13753..14730
DNA (978bp) protein (326aa)
regulatory protein, DeoR id=24609377 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
regulatory protein, DeoR Tax=GWF2_RBX1_38_17_curated
regulatory protein, DeoR
GWD2_RBX1_39_127_gwd2_scaffold_414_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

14959..18516
DNA (3558bp) protein (1186aa)
glycoside hydrolase family protein id=24609378 bin=RAAC11 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
glycoside hydrolase family protein Tax=GWF2_RBX1_38_17_curated
glycoside hydrolase
GWD2_RBX1_39_127_gwd2_scaffold_414_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

18698..20401
DNA (1704bp) protein (568aa)
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] Tax=GWF2_RBX1_38_17_curated
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein id=1978313 bin=GWD2_RBX1-related_39_127 species=Petrotoga mobilis genus=Petrotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
GWD2_RBX1_39_127_gwd2_scaffold_414_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

20463..21314
DNA (852bp) protein (284aa)
pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta (EC:1.2.7.3); K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3] Tax=GWF2_RBX1_38_17_curated
pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta (EC:1.2.7.3)
Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit id=1978314 bin=GWD2_RBX1-related_39_127 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_414_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

21732..23723
DNA (1992bp) protein (664aa)
4Fe-4S ferredoxin; K03388 heterodisulfide reductase subunit A [EC:1.8.98.1] Tax=GWF2_RBX1_38_17_curated
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein id=1978315 bin=GWD2_RBX1-related_39_127 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
4Fe-4S ferredoxin
GWD2_RBX1_39_127_gwd2_scaffold_414_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

23720..24166
DNA (447bp) protein (149aa)
methyl-viologen-reducing hydrogenase delta subunit; K14127 F420-non-reducing hydrogenase iron-sulfur subunit D [EC:1.12.99.-] Tax=GWF2_RBX1_38_17_curated
Coenzyme F420-reducing hydrogenase, delta subunit id=1978317 bin=GWD2_RBX1-related_39_127 species=Candidatus Korarchaeum cryptofilum genus=Candidatus Korarchaeum taxon_order=unknown taxon_class=unknown phylum=Korarchaeota tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
coenzyme F420-reducing hydrogenase subunit delta
GWD2_RBX1_39_127_gwd2_scaffold_414_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

24159..25145
DNA (987bp) protein (329aa)
NADH ubiquinone oxidoreductase 20 kDa subunit; K14128 F420-non-reducing hydrogenase subunit G [EC:1.12.99.-] Tax=GWF2_RBX1_38_17_curated
NADH ubiquinone oxidoreductase 20 kDa subunit id=2105469 bin=GWE2_RBX1_39_32 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
NADH ubiquinone oxidoreductase 20 kDa subunit
GWD2_RBX1_39_127_gwd2_scaffold_414_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

25145..26602
DNA (1458bp) protein (486aa)
nickel-dependent hydrogenase large subunit; K14126 F420-non-reducing hydrogenase subunit A [EC:1.12.99.-] Tax=GWF2_RBX1_38_17_curated
Nickel-dependent hydrogenase large subunit id=2105470 bin=GWE2_RBX1_39_32 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
nickel-dependent hydrogenase large subunit
GWD2_RBX1_39_127_gwd2_scaffold_414_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(26653..27768)
DNA (1116bp) protein (372aa)
Iron-containing alcohol dehydrogenase id=1978325 bin=GWD2_RBX1-related_39_127 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
iron-containing alcohol dehydrogenase Tax=GWF2_RBX1_38_17_curated
iron-containing alcohol dehydrogenase
GWD2_RBX1_39_127_gwd2_scaffold_414_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(27765..28121)
DNA (357bp) protein (119aa)
Mannose-6-phosphate isomerase id=2105472 bin=GWE2_RBX1_39_32 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
mannose-6-phosphate isomerase Tax=GWF2_RBX1_38_17_curated
mannose-6-phosphate isomerase
GWD2_RBX1_39_127_gwd2_scaffold_414_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(28196..28648)
DNA (453bp) protein (151aa)
hypothetical protein; K09768 hypothetical protein id=24609387 bin=RAAC11 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=RAAC11 organism_group=Unknown_CP
hypothetical protein; K09768 hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_414_24
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(28704..29663)
DNA (960bp) protein (320aa)
tRNA-dihydrouridine synthase id=2105474 bin=GWE2_RBX1_39_32 species=Desulfotalea psychrophila genus=Desulfotalea taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_414_25
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists


29986..31002
DNA (1017bp) protein (339aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=GWF2_RBX1_38_17_curated
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit id=2105475 bin=GWE2_RBX1_39_32 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_414_26
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

31028..33442
DNA (2415bp) protein (805aa)
Phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=24609390 bin=RAAC11 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
Phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=GWF2_RBX1_38_17_curated
Phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
GWD2_RBX1_39_127_gwd2_scaffold_414_27
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

33453..35924
DNA (2472bp) protein (824aa)
DNA mismatch repair protein MutS id=2105479 bin=GWE2_RBX1_39_32 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=GWF2_RBX1_38_17_curated
DNA mismatch repair protein MutS
Displaying 27 items

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