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gwe1_scaffold_1577

Alias: GWE1_WS6_33_547_16

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwe1_scaffold_1577_1
WS6_GWC1_33_20, WS6, Bacteria

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comp(52..1344)
DNA (1293bp) protein (431aa)
Histidyl-tRNA synthetase, histidyl-tRNA synthetase {ECO:0000313|EMBL:KKP43525.1}; EC=6.1.1.21 {ECO:0000313|EMBL:KKP43525.1};; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candida
Histidine--tRNA ligase n=6 Tax=Leptospira RepID=SYH_LEPBA rbh
hisS; histidyl-tRNA synthetase
(db=HMMPfam db_id=PF03129 from=342 to=429 evalue=1.6e-14 interpro_id=IPR004154 interpro_description=Anticodon-binding)
gwe1_scaffold_1577_2
WS6_GWF1_33_233, WS6, Bacteria

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2813..4096
DNA (1284bp) protein (428aa)
Putative penicillin-binding protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I2T7_CALAS
1A family penicillin-binding protein {ECO:0000313|EMBL:KKP45129.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
seg (db=Seg db_id=seg from=56 to=64)
gwe1_scaffold_1577_3
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(4101..6584)
DNA (2484bp) protein (828aa)
Phenylalanyl-tRNA synthetase subunit beta, phenylalanyl-tRNA synthetase beta chain {ECO:0000313|EMBL:KKP45128.1}; EC=6.1.1.20 {ECO:0000313|EMBL:KKP45128.1};; TaxID=1619096 species="Bacteria; candidate
Phenylalanine--tRNA ligase beta subunit n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTJ4_9BACT rbh
Phenylalanine-tRNA ligase beta subunit
seg (db=Seg db_id=seg from=688 to=705)
gwe1_scaffold_1577_4
WS6_GWF1_33_233, WS6, Bacteria

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comp(6586..7614)
DNA (1029bp) protein (343aa)
Phenylalanyl-tRNA synthetase subunit alpha, phenylalanyl-tRNA synthetase alpha chain {ECO:0000313|EMBL:KKP45127.1}; EC=6.1.1.20 {ECO:0000313|EMBL:KKP45127.1};; TaxID=1619096 species="Bacteria; candida
pheS; Phenylalanine--tRNA ligase alpha subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit n=3 Tax=Clostridium RepID=B8I1X0_CLOCE
seg (db=Seg db_id=seg from=235 to=245)
gwe1_scaffold_1577_5
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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comp(7726..8064)
DNA (339bp) protein (113aa)
50S ribosomal protein L20 n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=RL20_NATTJ
LSU ribosomal protein L20P; K02887 large subunit ribosomal protein L20 Tax=RIFOXYB1_FULL_WS6_33_15_curated
LSU ribosomal protein L20P
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=111 evalue=1.1e-38 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
gwe1_scaffold_1577_6
GWD1_WS6_35_594, WS6, Bacteria

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comp(8156..8809)
DNA (654bp) protein (218aa)
Translation initiation factor 3 n=1 Tax=human gut metagenome RepID=K1RRG3_9ZZZZ
Translation initiation factor 3 {ECO:0000313|EMBL:KKP81706.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
bacterial translation initiation factor 3 (bIF-3)
IF3 (db=PatternScan db_id=PS00938 from=68 to=81 evalue=0.0 interpro_id=IPR019813 interpro_description=Translation initiation factor 3, conserved site GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
gwe1_scaffold_1577_7
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

comp(8833..10593)
DNA (1761bp) protein (587aa)
Threonine--tRNA ligase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDN7_THET1 rbh
Threonine-tRNA ligase {ECO:0000313|EMBL:KKP81707.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
threonyl-tRNA synthetase
seg (db=Seg db_id=seg from=98 to=109)
gwe1_scaffold_1577_8
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(10753..11487)
DNA (735bp) protein (245aa)
RNA methyltransferase, RsmD family n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9D1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKP45123.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
putative methyltransferase
N6_MTASE (db=PatternScan db_id=PS00092 from=163 to=169 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
gwe1_scaffold_1577_9
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(11501..13453)
DNA (1953bp) protein (651aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45122.1}; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=217 to=230)
Fibronectin type III (db=superfamily db_id=SSF49265 from=513 to=628 evalue=0.0097 interpro_id=IPR003961 interpro_description=Fibronectin, type III GO=Molecular Function: protein binding (GO:0005515))
Displaying 9 items

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