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gwe1_scaffold_3673

Alias: GWE1_WS6_33_547_27

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwe1_scaffold_3673_1
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(1..384)
DNA (384bp) protein (128aa)
pdaA; putative polysaccharide deacetylase Tax=RIFOXYB1_FULL_WS6_33_15_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=6 to=27)
gwe1_scaffold_3673_2

Not on your lists

comp(406..942)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U5H4_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KKP55265.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
putative membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
gwe1_scaffold_3673_3
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

1010..1546
DNA (537bp) protein (179aa)
hypothetical protein Tax=RIFOXYB1_FULL_WS6_33_15_curated
gwe1_scaffold_3673_4
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

comp(1547..2179)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PZV6_METMA
Uncharacterized protein {ECO:0000313|EMBL:KKP81770.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
gwe1_scaffold_3673_5

Not on your lists

comp(2211..3092)
DNA (882bp) protein (294aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55268.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
no description (db=Gene3D db_id=G3DSA:3.30.470.20 from=162 to=285 evalue=0.00081 interpro_id=IPR013816 interpro_description=ATP-grasp fold, subdomain 2 GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ligase activity (GO:0016874))
seg (db=Seg db_id=seg from=20 to=43)
(db=HMMPfam db_id=PF08443 from=101 to=287 evalue=1.7e-21 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
gwe1_scaffold_3673_6
WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, Doikabacteria, Bacteria

Not on your lists

4958..6523
DNA (1566bp) protein (522aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=42 to=63)
gwe1_scaffold_3673_7
GWF1_WS6_36_8, WS6, Bacteria

Not on your lists

6591..7547
DNA (957bp) protein (319aa)
Putative uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LCC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKQ16960.1}; TaxID=1619098 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_36_8.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=3 to=10)
gwe1_scaffold_3673_8
WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, Doikabacteria, Bacteria

Not on your lists

7630..7941
DNA (312bp) protein (104aa)

This feature has no annotations

gwe1_scaffold_3673_9
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(7942..8637)
DNA (696bp) protein (232aa)
id=2803723 Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=15 to=27)
gwe1_scaffold_3673_10
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8770..9735
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Vibrio vulnificus (strain YJ016) RepID=Q7MK75_VIBVY
Uncharacterized protein {ECO:0000313|EMBL:ESW59524.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. C
hypothetical protein
coiled-coil (db=Coil db_id=coil from=10 to=31 evalue=NA)
gwe1_scaffold_3673_11
WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, Doikabacteria, Bacteria

Not on your lists

9751..10224
DNA (474bp) protein (158aa)

This feature has no annotations

gwe1_scaffold_3673_12
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(10540..10935)
DNA (396bp) protein (132aa)
Tax=RIFOXYB1_FULL_WS6_33_15_curated
gwe1_scaffold_3673_13
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(10969..11748)
DNA (780bp) protein (260aa)
alias=ws6_closed_nogaps_final_464 Tax=RIFOXYB1_FULL_WS6_33_15_curated
LuxS/MPP-like metallohydrolase (db=superfamily db_id=SSF63411 from=47 to=247 evalue=3.1e-08 interpro_id=IPR011249 interpro_description=Metalloenzyme, LuxS/M16 peptidase-like, metal-binding GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: metal ion binding (GO:0046872))
Displaying 13 items

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