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gwe1_scaffold_5896

Alias: GWE1_WS6_33_547_33

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Displaying 8 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwe1_scaffold_5896_1
WS6_GWF1_33_233, WS6, Bacteria

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comp(3..1067)
DNA (1065bp) protein (355aa)
DNA repair protein radA n=30 Tax=Xanthomonadaceae RepID=B2STM0_XANOP
Repair protein RadA, DNA repair protein RadA/Sms protein {ECO:0000313|EMBL:KKP43970.1}; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bact
DNA repair protein RadA
seg (db=Seg db_id=seg from=303 to=313)
gwe1_scaffold_5896_2
WS6_GWC1_33_20, WS6, Bacteria

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comp(1084..2274)
DNA (1191bp) protein (397aa)
ATPase AAA-2 domain protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MLV1_ALKOO rbh
ATPase AAA-2 domain-containing protein, ATP-dependent Clp protease ATP-binding subunit ClpC {ECO:0000313|EMBL:KKP42936.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate
ATPase
coiled-coil (db=Coil db_id=coil from=17 to=52 evalue=NA)
gwe1_scaffold_5896_3
WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, Doikabacteria, Bacteria

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2451..2639
DNA (189bp) protein (63aa)

This feature has no annotations

gwe1_scaffold_5896_4
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2685..3086
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) RepID=D0NRS3_PHYIT
Uncharacterized protein {ECO:0000313|EMBL:CDB13453.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
gwe1_scaffold_5896_5
WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, Doikabacteria, Bacteria

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3288..3560
DNA (273bp) protein (91aa)

This feature has no annotations

gwe1_scaffold_5896_6
WS6_GWF1_33_233, WS6, Bacteria

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comp(3578..4810)
DNA (1233bp) protein (411aa)
RNA binding S1 domain protein n=2 Tax=Roseiflexus RepID=A7NKT3_ROSCS
RNA-binding S1 domain-containing protein, small subunit ribosomal protein S1 {ECO:0000313|EMBL:KKP43973.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 ba
RNA-binding S1 domain-containing protein
seg (db=Seg db_id=seg from=3 to=15)
gwe1_scaffold_5896_7
WS6_GWC1_33_20, WS6, Bacteria

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comp(4914..5510)
DNA (597bp) protein (199aa)
Endonuclease III, endonuclease III {ECO:0000313|EMBL:KKP42938.1}; EC=4.2.99.18 {ECO:0000313|EMBL:KKP42938.1};; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6
Endonuclease III n=3 Tax=Enterobacteriaceae RepID=G3F9Q5_ECOLX
Putative endonuclease III
ENDONUCLEASE_III_2 (db=PatternScan db_id=PS01155 from=104 to=133 evalue=0.0 interpro_id=IPR004036 interpro_description=Endonuclease III, conserved site-2 GO=Molecular Function: endonuclease activity (GO:0004519), Biological Process: DNA repair (GO:0006281))
gwe1_scaffold_5896_8
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(5503..6519)
DNA (1017bp) protein (339aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43975.1}; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=10 to=112 evalue=0.00023)
seg (db=Seg db_id=seg from=65 to=79)
(db=HMMPfam db_id=PF02223 from=13 to=111 evalue=1.2e-07 interpro_id=IPR018094 interpro_description=Thymidylate kinase GO=Molecular Function: thymidylate kinase activity (GO:0004798), Molecular Function: ATP binding (GO:0005524), Biological Process: dTDP biosynthetic process (GO:0006233))
Displaying 8 items

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