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gwe1_scaffold_7628_5

Organism: WS6_GWE1_33_547

near complete RP 48 / 55 MC: 8 BSCG 44 / 51 ASCG 7 / 38 MC: 1
Location: 3009..3431

Top 3 Functional Annotations

Value Algorithm Source
rbcL; ribulose bisophosphate carboxylase (EC:4.1.1.39) similarity KEGG
DB: KEGG
  • Identity: 39.0
  • Coverage: 136.0
  • Bit_score: 80
  • Evalue 5.00e-13
Ribulose bisphosphate carboxylase n=2 Tax=Desulfurococcus RepID=B8D5T5_DESK1 similarity UNIREF
DB: UNIREF90
  • Identity: 42.0
  • Coverage: 0.0
  • Bit_score: 83
  • Evalue 6.00e+00
Ribulose bisphosphate carboxylase, type III {ECO:0000313|EMBL:KKP54466.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;" UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 135.0
  • Bit_score: 274
  • Evalue 1.20e-70

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Notes

Scaffolding gaps curated out. Fixed sequence: >gwe1_7628_RuBisCO MAVQLNYIAPKGWEPPMDGRDYLITYLDIELADGIPDEKFRDAAASCAAESSTGTWTKVYAGKDSGIKMA EKMKAVAYDLNPEKKTFKIAYRSDLFEEGNMAGLLAGVAGNIDSMKMLKAFRLIDIKFPKNIVNSFPGPQ FGIDGVRKFMEIERGPMLCTVPKPKVGRTALEQAQLAKVLFTAAKGEFQGIKDDENLTSLYFNTFEDRCK KVHAVQREIEQKSGRKKFYLCNITHSDLDIMLERADMIKENGGRWLMMDAVTTGFTAVQTVRKHNPGLAI HAHRAMHGLLDRESGPGVHDGGKIVDFSMSMVVIAKIMRLLGVDSLHGGAPKTKMENYGEPKLVQEALQE DITPATDMTLGQNWYGMKGVWHVASGGLHAGTIGDSITQLGENLIIQAGGGVLGHPWGIEAGVEAVVQAR DLAMAKGDIKAWIIDNPESALAKAAQHWGFDPRIVY* Jill Banfield (8/2/14)

Taxonomy

candidate division WS6 bacterium GW2011_GWB1_33_6 → Bacteria

Sequences

DNA sequence
Length: 423
ATGGCTGTACAATTAAACTATATTGCTCCAAAGGGATGGGAACCACCTATGGATGGTAGGGATTACCTTATCACGTATCTTGATATTGAATTGGCTGATGGTATTCCAGATGAGAAGTTTAGAGATGCGGCTGCTAGCTGTGCTGCAGAAAGTTCTACTGGTACATGGACAAAAGTATATGCTGGTAAGGATTCTGGTATAAAGATGGCGGAGAAAATGAAGGCTGTTGCCTATGATTTAAATCCAGAAAAAAAGACCTTTAAGATAGCGTATAGGAGTGATTTGTTTGAGGAGGGTAATATGGCTGGTCTTTTAGCTGGTGTTGCTGGAAATATTGATAGTATGAAGATGTTAAAGGCTTTTAGGTTAATTGATATTAAATTTCCTAAAAATATTGTAAACAGTTTNNNNNATGGAAATTGA
PROTEIN sequence
Length: 141
MAVQLNYIAPKGWEPPMDGRDYLITYLDIELADGIPDEKFRDAAASCAAESSTGTWTKVYAGKDSGIKMAEKMKAVAYDLNPEKKTFKIAYRSDLFEEGNMAGLLAGVAGNIDSMKMLKAFRLIDIKFPKNIVNSXXXGN*