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gwe1_scaffold_7628

Alias: GWE1_WS6_33_547_35

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwe1_scaffold_7628_1

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98..688
DNA (591bp) protein (197aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XSZ2_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:KKP54462.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
ECF subfamily RNA polymerase sigma factor
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=57 to=88 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
gwe1_scaffold_7628_2
WS6_GWF1_33_233, WS6, Bacteria

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672..1391
DNA (720bp) protein (240aa)
Putative uncharacterized protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XSZ3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP43922.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
seg (db=Seg db_id=seg from=3 to=20)
gwe1_scaffold_7628_3
WS6_GWF1_33_233, WS6, Bacteria

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1498..1887
DNA (390bp) protein (130aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP43923.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
coiled-coil (db=Coil db_id=coil from=87 to=108 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
seg (db=Seg db_id=seg from=5 to=20)
gwe1_scaffold_7628_4
WS6_GWF1_33_233, WS6, Bacteria

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comp(1970..2968)
DNA (999bp) protein (333aa)
rlmN2; ribosomal RNA large subunit methyltransferase N 2 (EC:2.1.1.- 2.1.1.192)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CB37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKP43924.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=90 to=273 evalue=1.1e-10)
gwe1_scaffold_7628_5

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3009..3431
DNA (423bp) protein (141aa)
rbcL; ribulose bisophosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase n=2 Tax=Desulfurococcus RepID=B8D5T5_DESK1
Ribulose bisphosphate carboxylase, type III {ECO:0000313|EMBL:KKP54466.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
no description (db=Gene3D db_id=G3DSA:3.30.70.150 from=5 to=136 evalue=1.2e-19 interpro_id=IPR017443 interpro_description=Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO=Biological Process: carbon fixation (GO:0015977), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
Scaffolding gaps curated out. Fixed sequence: >gwe1_7628_RuBisCO MAVQLNYIAPKGWEPPMDGRDYLITYLDIELADGIPDEKFRDAAASCAAESSTGTWTKVYAGKDSGIKMA EKMKAVAYDLNPEKKTFKIAYRSDLFEEGNMAGLLAGVAGNIDSMKMLKAFRLIDIKFPKNIVNSFPGPQ FGIDGVRKFMEIERGPMLCTVPKPKVGRTALEQAQLAKVLFTAAKGEFQGIKDDENLTSLYFNTFEDRCK KVHAVQREIEQKSGRKKFYLCNITHSDLDIMLERADMIKENGGRWLMMDAVTTGFTAVQTVRKHNPGLAI HAHRAMHGLLDRESGPGVHDGGKIVDFSMSMVVIAKIMRLLGVDSLHGGAPKTKMENYGEPKLVQEALQE DITPATDMTLGQNWYGMKGVWHVASGGLHAGTIGDSITQLGENLIIQAGGGVLGHPWGIEAGVEAVVQAR DLAMAKGDIKAWIIDNPESALAKAAQHWGFDPRIVY* Jill Banfield (8/2/14)
gwe1_scaffold_7628_6
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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3421..4011
DNA (591bp) protein (197aa)
rbcL; ribulose bisophosphate carboxylase (EC:4.1.1.39); K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] Tax=RIFOXYB1_FULL_WS6_33_15_curated
Ribulose bisophosphate carboxylase (Fragment) n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QT64_9EURY
ribulose bisphosphate carboxylase, type III
seg (db=Seg db_id=seg from=182 to=195)
gwe1_scaffold_7628_7
WS6_GWC1_33_20, WS6, Bacteria

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4008..4307
DNA (300bp) protein (100aa)
Ribulose bisophosphate carboxylase, ribulose-bisphosphate carboxylase large chain {ECO:0000313|EMBL:KKP44747.1}; EC=4.1.1.39 {ECO:0000313|EMBL:KKP44747.1};; TaxID=1619089 species="Bacteria; candidate
rbcL; ribulose bisophosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J1ANE7_9EURY
(db=HMMPfam db_id=PF00016 from=5 to=89 evalue=1.1e-16 interpro_id=IPR000685 interpro_description=Ribulose bisphosphate carboxylase, large subunit, C-terminal GO=Molecular Function: magnesium ion binding (GO:0000287), Cellular Component: plastid (GO:0009536), Biological Process: carbon fixation (GO:0015977), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
gwe1_scaffold_7628_8
WS6_GWF1_33_233, WS6, Bacteria

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4335..5375
DNA (1041bp) protein (347aa)
Prolyl-tRNA synthetase, prolyl-tRNA synthetase {ECO:0000313|EMBL:KKP43927.1}; EC=6.1.1.15 {ECO:0000313|EMBL:KKP43927.1};; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" s
proS; prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=7 Tax=Myroides RepID=H1GR10_9FLAO rbh
seg (db=Seg db_id=seg from=293 to=308)
gwe1_scaffold_7628_9
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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5435..5752
DNA (318bp) protein (106aa)
prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] Tax=RIFOXYB1_FULL_WS6_33_15_curated
proS; Proline--tRNA ligase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SJT1_9BACT
Suspect SCG annotation. See neighboring gene [gwe1_scaffold_7628_8].
Displaying 9 items

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