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GWE2_RBX1_39_32_gwe2_scaffold_713

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWE2_RBX1_39_32_gwe2_scaffold_713_1
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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159..1118
DNA (960bp) protein (320aa)
id=2148147 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2148147 Tax=GWF2_RBX1_38_17_curated
GWE2_RBX1_39_32_gwe2_scaffold_713_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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1123..2484
DNA (1362bp) protein (454aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=1802675 bin=GWD2_RBX1-related_39_127 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
two component sigma-54 specific Fis family transcriptional regulator Tax=GWF2_RBX1_38_17_curated
two component sigma-54 specific Fis family transcriptional regulator
GWE2_RBX1_39_32_gwe2_scaffold_713_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(2470..4974)
DNA (2505bp) protein (835aa)
putative histidine kinase (EC:2.7.13.3) Tax=GWF2_RBX1_38_17_curated
putative histidine kinase (EC:2.7.13.3)
Putative Histidine kinase, contains GAF domain id=1802677 bin=GWD2_RBX1-related_39_127 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWE2_RBX1_39_32_gwe2_scaffold_713_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(4913..5047)
DNA (135bp) protein (45aa)
id=2148150 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2148150 Tax=GWF2_RBX1_38_17_curated
GWE2_RBX1_39_32_gwe2_scaffold_713_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(5292..5816)
DNA (525bp) protein (175aa)
fumarate hydratase subunit beta (EC:4.2.1.2); K01678 fumarate hydratase subunit beta [EC:4.2.1.2] Tax=GWF2_RBX1_38_17_curated
putative fumarate hydratase subunit beta (Fumarase) (EC:4.2.1.2)
Fumarate hydratase class I, aerobic L(+)-tartrate dehydratase beta subunit id=2148151 bin=GWE2_RBX1_39_32 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWE2_RBX1_39_32_gwe2_scaffold_713_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(5809..6360)
DNA (552bp) protein (184aa)
5-formyltetrahydrofolate cyclo-ligase (EC:6.3.3.2); K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] Tax=GWF2_RBX1_38_17_curated
5-formyltetrahydrofolate cyclo-ligase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase id=4144205 bin=GWF2_OP9-related_38_17 species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
GWE2_RBX1_39_32_gwe2_scaffold_713_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(6378..7220)
DNA (843bp) protein (281aa)
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2); K01677 fumarate hydratase subunit alpha [EC:4.2.1.2] Tax=GWF2_RBX1_38_17_curated
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit id=2148153 bin=GWE2_RBX1_39_32 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWE2_RBX1_39_32_gwe2_scaffold_713_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(7220..8479)
DNA (1260bp) protein (420aa)
icd; isocitrate dehydrogenase, nADP-dependent; K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=GWF2_RBX1_38_17_curated
Isocitrate dehydrogenase [NADP] id=1802686 bin=GWD2_RBX1-related_39_127 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
icd; isocitrate dehydrogenase, nADP-dependent
GWE2_RBX1_39_32_gwe2_scaffold_713_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(8596..9099)
DNA (504bp) protein (168aa)
3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] Tax=GWF2_RBX1_38_17_curated
3-isopropylmalate dehydratase small subunit id=2148155 bin=GWE2_RBX1_39_32 species=Methanosalsum zhilinae genus=Methanosalsum taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
3-isopropylmalate dehydratase small subunit
GWE2_RBX1_39_32_gwe2_scaffold_713_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(9116..10369)
DNA (1254bp) protein (418aa)
homoaconitate hydratase family protein (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=GWF2_RBX1_38_17_curated
homoaconitate hydratase family protein (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit id=2148156 bin=GWE2_RBX1_39_32 species=Methanosalsum zhilinae genus=Methanosalsum taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWE2_RBX1_39_32_gwe2_scaffold_713_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(10384..12198)
DNA (1815bp) protein (605aa)
Pyruvate carboxyltransferase id=2148157 bin=GWE2_RBX1_39_32 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
pyruvate carboxyltransferase Tax=GWF2_RBX1_38_17_curated
pyruvate carboxyltransferase
GWE2_RBX1_39_32_gwe2_scaffold_713_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(12376..14958)
DNA (2583bp) protein (861aa)
alpha-amylase/alpha-mannosidase Tax=GWF2_RBX1_38_17_curated
Glycoside hydrolase family 57 id=1802729 bin=GWD2_RBX1-related_39_127 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
alpha-amylase/alpha-mannosidase
GWE2_RBX1_39_32_gwe2_scaffold_713_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(15114..15623)
DNA (510bp) protein (170aa)
Flavin reductase domain protein FMN-binding id=2148159 bin=GWE2_RBX1_39_32 species=Archaeoglobus sulfaticallidus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
Conserved protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family Tax=GWF2_RBX1_38_17_curated
Conserved protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family
GWE2_RBX1_39_32_gwe2_scaffold_713_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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15800..16159
DNA (360bp) protein (120aa)
VanZ like family id=2148160 bin=GWE2_RBX1_39_32 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
vanz family protein Tax=GWF2_RBX1_38_17_curated
vanz family protein
GWE2_RBX1_39_32_gwe2_scaffold_713_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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16351..18984
DNA (2634bp) protein (878aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Tax=GWF2_RBX1_38_17_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase id=2148161 bin=GWE2_RBX1_39_32 species=unknown genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWE2_RBX1_39_32_gwe2_scaffold_713_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

18985..19791
DNA (807bp) protein (269aa)
murI; glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3] Tax=GWF2_RBX1_38_17_curated
Glutamate racemase id=1802742 bin=GWD2_RBX1-related_39_127 species=[Clostridium] difficile genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
murI; glutamate racemase
GWE2_RBX1_39_32_gwe2_scaffold_713_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

19892..20248
DNA (357bp) protein (119aa)
queuosine biosynthesis protein QueD; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=GWF2_RBX1_38_17_curated
6-carboxy-5,6,7,8-tetrahydropterin synthase id=1802745 bin=GWD2_RBX1-related_39_127 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
6-pyruvoyl tetrahydrobiopterin synthase
GWE2_RBX1_39_32_gwe2_scaffold_713_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

20310..20960
DNA (651bp) protein (217aa)
7-cyano-7-deazaguanine synthase id=2148212 bin=GWE2_RBX1_39_32 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
exoenzyme S synthesis protein B; K06920 queuosine biosynthesis protein QueC Tax=GWF2_RBX1_38_17_curated
exoenzyme S synthesis protein B
GWE2_RBX1_39_32_gwe2_scaffold_713_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(20957..22078)
DNA (1122bp) protein (374aa)
cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] Tax=GWF2_RBX1_38_17_curated
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Cyclopropane-fatty-acyl-phospholipid synthase id=2148214 bin=GWE2_RBX1_39_32 species=Denitrovibrio acetiphilus genus=Denitrovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWE2_RBX1_39_32_gwe2_scaffold_713_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(22099..22563)
DNA (465bp) protein (155aa)
id=2148215 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2148215 Tax=GWF2_RBX1_38_17_curated
GWE2_RBX1_39_32_gwe2_scaffold_713_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(22588..23103)
DNA (516bp) protein (172aa)
id=2148216 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2148216 Tax=GWF2_RBX1_38_17_curated
GWE2_RBX1_39_32_gwe2_scaffold_713_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

23423..23986
DNA (564bp) protein (188aa)
id=2148217 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=2148217 Tax=GWF2_RBX1_38_17_curated
GWE2_RBX1_39_32_gwe2_scaffold_713_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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24264..25157
DNA (894bp) protein (298aa)
Flagellar protein FlgJ id=2148218 bin=GWE2_RBX1_39_32 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
lytic transglycosylase Tax=GWF2_RBX1_38_17_curated
lytic transglycosylase
GWE2_RBX1_39_32_gwe2_scaffold_713_24
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

25479..27329
DNA (1851bp) protein (617aa)
GTP-binding protein TypA id=2148219 bin=GWE2_RBX1_39_32 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GTP-binding protein TypA; K06207 GTP-binding protein Tax=GWF2_RBX1_38_17_curated
GTP-binding protein TypA
Displaying 24 items

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