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GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_1
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..287)
DNA (285bp) protein (95aa)
putative GAF sensor protein id=5083748 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Putative periplasmic ligand-binding sensor domain protein {ECO:0000313|EMBL:EWS63399.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogeno
putative GAF sensor protein
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

434..826
DNA (393bp) protein (131aa)
hypothetical protein; K09131 hypothetical protein id=5083749 bin=GWF1_Burkholderiales_GWF1_66_17 species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein; K09131 hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(830..1390)
DNA (561bp) protein (187aa)
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] id=5083750 bin=GWF1_Burkholderiales_GWF1_66_17 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=GWE1_Burkholderiales_65_30_curated
phosphoglycerate mutase
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1497..3713)
DNA (2217bp) protein (739aa)
heme catalase/peroxidase; K03782 catalase-peroxidase [EC:1.11.1.21] Tax=GWE1_Burkholderiales_65_30_curated
heme catalase/peroxidase; K03782 catalase-peroxidase [EC:1.11.1.21] id=5083751 bin=GWF1_Burkholderiales_GWF1_66_17 species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
heme catalase/peroxidase
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3923..4936)
DNA (1014bp) protein (338aa)
Auxin efflux carrier id=1311011 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
auxin efflux carrier Tax=GWE1_Burkholderiales_65_30_curated
auxin efflux carrier
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5010..7082
DNA (2073bp) protein (691aa)
rep; ATP-dependent DNA helicase; K03656 ATP-dependent DNA helicase Rep [EC:3.6.4.12] Tax=GWE1_Burkholderiales_65_30_curated
UvrD/REP helicase id=1311012 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rep; ATP-dependent DNA helicase
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7079..7597
DNA (519bp) protein (173aa)
Uncharacterized protein id=5083754 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Uncharacterized protein Tax=GWE1_Burkholderiales_65_30_curated
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7810..8829
DNA (1020bp) protein (340aa)
cytochrome-c peroxidase (EC:1.11.1.5); K00428 cytochrome c peroxidase [EC:1.11.1.5] id=5083755 bin=GWF1_Burkholderiales_GWF1_66_17 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
cytochrome-c peroxidase (EC:1.11.1.5); K00428 cytochrome c peroxidase [EC:1.11.1.5] Tax=GWE1_Burkholderiales_65_30_curated
cytochrome-c peroxidase (EC:1.11.1.5)
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8901..9299)
DNA (399bp) protein (133aa)
Putative uncharacterized protein id=5083756 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Putative uncharacterized protein Tax=GWE1_Burkholderiales_65_30_curated
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9514..10572)
DNA (1059bp) protein (353aa)
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein id=5083757 bin=GWF1_Burkholderiales_GWF1_66_17 species=Rhizobium sp. AP16 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_trna_2
unknown

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comp(10646..10718)
DNA (73bp)
transferRNA
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10775..11467)
DNA (693bp) protein (231aa)
two component Fis family transcriptional regulator id=5083758 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
two component Fis family transcriptional regulator Tax=GWE1_Burkholderiales_65_30_curated
two component Fis family transcriptional regulator
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_12
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11498..13669)
DNA (2172bp) protein (724aa)
two component transcriptional regulator, senor histidine kinase Tax=GWE1_Burkholderiales_65_30_curated
PAS/PAC sensor signal transduction histidine kinase id=5083759 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
two component transcriptional regulator, senor histidine kinase
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13789..14532)
DNA (744bp) protein (248aa)
hypothetical protein id=5083760 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14474..15823)
DNA (1350bp) protein (450aa)
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] id=5083761 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=GWE1_Burkholderiales_65_30_curated
sun protein
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15849..16919)
DNA (1071bp) protein (357aa)
peptidase M48, Ste24p id=5083762 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
peptidase M48, Ste24p Tax=GWE1_Burkholderiales_65_30_curated
peptidase M48, Ste24p
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16921..17514)
DNA (594bp) protein (198aa)
LemA family protein id=1311022 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
LemA family protein; K03744 LemA protein Tax=GWE1_Burkholderiales_65_30_curated
LemA family protein
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17697..21911)
DNA (4215bp) protein (1405aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] id=5083764 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) Tax=GWE1_Burkholderiales_65_30_curated
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21939..26063)
DNA (4125bp) protein (1375aa)
DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=GWE1_Burkholderiales_65_30_curated
DNA-directed RNA polymerase subunit beta id=1311024 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
DNA-directed RNA polymerase subunit beta
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_19
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26369..26743)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 id=1311025 bin=GWE1_Burkholderiales_65_30 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
50S ribosomal protein L7/l12
Tax=BJP_08E140C01_Burkholderiales_65_30
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26785..27339)
DNA (555bp) protein (185aa)
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 id=5083767 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
rplJ; 50S ribosomal protein L10 Tax=GWE1_Burkholderiales_65_30_curated
rplJ; 50S ribosomal protein L10
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_21
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27594..28289)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 id=1311027 bin=GWE1_Burkholderiales_65_30 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rplA; 50S ribosomal protein L1
Tax=BJP_08E140C01_Burkholderiales_65_30
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_22
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(28290..28721)
DNA (432bp) protein (144aa)
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=5083769 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
rplK; ribosomal protein L11
Tax=BJP_08E140C01_Burkholderiales_65_30
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28837..29412)
DNA (576bp) protein (192aa)
NusG antitermination factor; K02601 transcriptional antiterminator NusG id=5083770 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
NusG antitermination factor; K02601 transcriptional antiterminator NusG Tax=GWE1_Burkholderiales_65_30_curated
NusG antitermination factor
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_24
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29412..29795)
DNA (384bp) protein (128aa)
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE id=5083771 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
secE; preprotein translocase subunit SecE
Tax=BJP_08E140C01_Burkholderiales_65_30
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_trna_1
unknown

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comp(29946..30018)
DNA (73bp)
transferRNA
GWF1_Burkholderiales_GWF1_66_17_gwf1_scaffold_529_25
unknown

Not on your lists

comp(30047..30121)
DNA (75bp) protein (25aa)

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Displaying 27 items

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