ggKbase home page

GWF2_Lentisphaerae_50_93_gwf2_scaffold_398

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_trna_3
unknown

Not on your lists

comp(475..556)
DNA (82bp)
transferRNA
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_trna_2
unknown

Not on your lists

comp(594..664)
DNA (71bp)
transferRNA
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_1
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(739..4119)
DNA (3381bp) protein (1127aa)
CRISPR-associated protein, Csd1 family id=4148032 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein Tax=GWF2_Lentisphaerae_50_93_curated
hypothetical protein
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_2
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

4324..4725
DNA (402bp) protein (134aa)
CheY-like receiver domain protein id=4148033 bin=GWF2_Lentisphaerae_50_93 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
multi-sensor hybrid histidine kinase Tax=GWF2_Lentisphaerae_50_93_curated
multi-sensor hybrid histidine kinase
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_3
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(4748..5434)
DNA (687bp) protein (229aa)
id=4148034 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
id=4148034 Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_4
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

5659..8085
DNA (2427bp) protein (809aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] Tax=GWF2_Lentisphaerae_50_93_curated
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
K(+)-insensitive pyrophosphate-energized proton pump id=4148035 bin=GWF2_Lentisphaerae_50_93 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_5
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

8243..8479
DNA (237bp) protein (79aa)
Hydrogenase expression/formation protein HypC id=4148036 bin=GWF2_Lentisphaerae_50_93 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hydrogenase expression/formation protein HypC Tax=GWF2_Lentisphaerae_50_93_curated
hydrogenase assembly chaperone HypC/HupF
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_6
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

8476..9564
DNA (1089bp) protein (363aa)
Hydrogenase expression/formation protein HypD id=4148037 bin=GWF2_Lentisphaerae_50_93 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hydrogenase expression/formation protein HypD; K04654 hydrogenase expression/formation protein HypD Tax=GWF2_Lentisphaerae_50_93_curated
hydrogenase expression/formation protein HypD
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_7
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

9672..11579
DNA (1908bp) protein (636aa)
NADH dehydrogenase (quinone) id=4148038 bin=GWF2_Lentisphaerae_50_93 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Energy-conserving hydrogenase (ferredoxin), subunit A Tax=GWF2_Lentisphaerae_50_93_curated
ech hydrogenase subunit A
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_8
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

11584..12453
DNA (870bp) protein (290aa)
Respiratory-chain NADH dehydrogenase subunit 1 id=4148052 bin=GWF2_Lentisphaerae_50_93 species=Methanolinea tarda genus=Methanolinea taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
formate hydrogenlyase subunit 4 Tax=GWF2_Lentisphaerae_50_93_curated
formate hydrogenlyase subunit 4
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_9
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

12458..12916
DNA (459bp) protein (153aa)
NADH ubiquinone oxidoreductase, 20 kDa subunit id=4148055 bin=GWF2_Lentisphaerae_50_93 species=Methanoregula boonei genus=Methanoregula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
NADH ubiquinone oxidoreductase, 20 kDa subunit Tax=GWF2_Lentisphaerae_50_93_curated
NADH ubiquinone oxidoreductase, 20 kDa subunit
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_10
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

12913..13302
DNA (390bp) protein (130aa)
NADH dehydrogenase (Ubiquinone), 30 kDa subunit id=4148058 bin=GWF2_Lentisphaerae_50_93 species=Methanoculleus bourgensis genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
NADH dehydrogenase (ubiquinone), 30 kDa subunit Tax=GWF2_Lentisphaerae_50_93_curated
echD; NADH dehydrogenase (ubiquinone), 30 kDa subunit
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_11
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

13304..14383
DNA (1080bp) protein (360aa)
ech hydrogenase subunit E (EC:1.6.99.5)
Ech hydrogenase subunit E id=4148060 bin=GWF2_Lentisphaerae_50_93 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
ech hydrogenase subunit E Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_12
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

14387..14779
DNA (393bp) protein (131aa)
Putative uncharacterized protein id=4148062 bin=GWF2_Lentisphaerae_50_93 species=Lachnospiraceae bacterium 3_1_57FAA_CT1 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) Tax=GWF2_Lentisphaerae_50_93_curated
hypothetical protein
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_13
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

14839..15981
DNA (1143bp) protein (381aa)
(NiFe) hydrogenase maturation protein HypF id=4148065 bin=GWF2_Lentisphaerae_50_93 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
(NiFe) hydrogenase maturation protein HypF; K04656 hydrogenase maturation protein HypF Tax=GWF2_Lentisphaerae_50_93_curated
(NiFe) hydrogenase maturation protein HypF
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_14
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(16083..16925)
DNA (843bp) protein (281aa)
Hydrogenase accessory protein HypB id=4148068 bin=GWF2_Lentisphaerae_50_93 species=Hyphomicrobium denitrificans genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypB; Hydrogenase nickel incorporation protein hypB Tax=GWF2_Lentisphaerae_50_93_curated
hydrogenase accessory protein HypB
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_15
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(16993..17334)
DNA (342bp) protein (114aa)
Probable hydrogenase nickel incorporation protein HypA id=4148071 bin=GWF2_Lentisphaerae_50_93 species=Chlorobium chlorochromatii genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hydrogenase expression/synthesis, HypA; K04651 hydrogenase nickel incorporation protein HypA/HybF Tax=GWF2_Lentisphaerae_50_93_curated
hydrogenase expression/synthesis, HypA
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_16
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(17352..18359)
DNA (1008bp) protein (336aa)
Hydrogenase maturation protein, carbamoyl dehydratase HypE id=4148075 bin=GWF2_Lentisphaerae_50_93 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Hydrogenase maturation protein, carbamoyl dehydratase HypE Tax=GWF2_Lentisphaerae_50_93_curated
Hydrogenase maturation protein, carbamoyl dehydratase HypE
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_17
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(18392..18883)
DNA (492bp) protein (164aa)
Iron (Metal) dependent repressor, DtxR family id=4148078 bin=GWF2_Lentisphaerae_50_93 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
DtxR family iron (metal) dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator Tax=GWF2_Lentisphaerae_50_93_curated
DtxR family iron (metal) dependent repressor
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_18
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(18891..19145)
DNA (255bp) protein (85aa)
id=4148081 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
id=4148081 Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_19
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(19166..19720)
DNA (555bp) protein (185aa)
NUDIX hydrolase id=4148082 bin=GWF2_Lentisphaerae_50_93 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
phosphohydrolase Tax=GWF2_Lentisphaerae_50_93_curated
phosphohydrolase
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_20
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(19717..20730)
DNA (1014bp) protein (338aa)
aroF1; 3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=GWF2_Lentisphaerae_50_93_curated
aroF1; 3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase id=4148084 bin=GWF2_Lentisphaerae_50_93 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_21
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

20865..21812
DNA (948bp) protein (316aa)
Ppx/GppA phosphatase id=4148086 bin=GWF2_Lentisphaerae_50_93 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Ppx/GppA family phosphatase Tax=GWF2_Lentisphaerae_50_93_curated
Ppx/GppA family phosphatase
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_22
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

21931..22182
DNA (252bp) protein (84aa)
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein id=4148088 bin=GWF2_Lentisphaerae_50_93 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
transcriptional regulator Tax=GWF2_Lentisphaerae_50_93_curated
transcriptional regulator
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_23
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

22179..22589
DNA (411bp) protein (137aa)
Putative uncharacterized protein id=4148090 bin=GWF2_Lentisphaerae_50_93 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
twitching motility protein PilT; K07063 Tax=GWF2_Lentisphaerae_50_93_curated
twitching motility protein PilT
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_24
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

22597..22845
DNA (249bp) protein (83aa)
id=4148092 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
id=4148092 Tax=GWF2_Lentisphaerae_50_93_curated
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_25
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(22913..24157)
DNA (1245bp) protein (415aa)
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83); K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] Tax=GWF2_Lentisphaerae_50_93_curated
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase apoenzyme id=4148093 bin=GWF2_Lentisphaerae_50_93 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_26
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(24213..25334)
DNA (1122bp) protein (374aa)
purH; bifunctional purine biosynthesis protein PurH; K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] Tax=GWF2_Lentisphaerae_50_93_curated
IMP cyclohydrolase id=4148095 bin=GWF2_Lentisphaerae_50_93 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
purH; bifunctional purine biosynthesis protein PurH
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_27
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

25561..26574
DNA (1014bp) protein (338aa)
Polysaccharide deacetylase id=4148097 bin=GWF2_Lentisphaerae_50_93 species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
polysaccharide deacetylase Tax=GWF2_Lentisphaerae_50_93_curated
polysaccharide deacetylase
GWF2_Lentisphaerae_50_93_gwf2_scaffold_398_28
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

26762..27175
DNA (414bp) protein (138aa)
UmuD2 id=4148099 bin=GWF2_Lentisphaerae_50_93 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
umuD; SOS mutagenesis protein UmuD Tax=GWF2_Lentisphaerae_50_93_curated
umuD; SOS mutagenesis protein UmuD
Displaying items 1-30 of 99 in total

View Taxonomy